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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 214ChIP-seq
  • 189total RNA-seq
  • 23ATAC-seq
  • 6DNase-seq
  • 5WGBS
  • 4Hi-C
  • 3pCHi-C
  • 3small RNA-seq
  • 2RRBS
  • 2STARR-seq
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 214DNA binding
  • 193Transcription
  • 29DNA accessibility
  • 7DNA methylation
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • transcription factor
  • 108control
  • 103histone modification
  • 102histone
  • 82recombinant protein
  • 60narrow histone mark
  • 58RNA binding protein
  • 42broad histone mark
  • 23chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 194May, 2020
  • 74November, 2017
  • 50August, 2017
  • 40May, 2022
  • 30December, 2017
  • 24August, 2021
  • 10July, 2019
  • 7October, 2019
  • 5December, 2019
  • 5January, 2019
  • 4November, 2018
  • 3February, 2021
  • 3March, 2020
  • 2June, 2019
  • 1December, 2018
  • 1February, 2020
Available data
  • 355bam
  • 289bigWig
  • 174tsv
  • 138fastq
  • 112bed narrowPeak
  • 86tagAlign
  • 44bigBed narrowPeak
  • 19bed broadPeak
  • 19bigBed broadPeak
  • 11bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 453Homo sapiens
Biosample type
  • 322tissue
  • 104cell line
  • 14primary cell
  • 13in vitro differentiated cells
Organ
  • 927pancreas
  • 644connective tissue
  • 515epithelium
  • 474adipose tissue
  • 453liver
  • 376heart
  • 344kidney
  • 283brain
  • 227vasculature
  • 222blood vessel
  • 159bone element
  • 136artery
  • 122limb
  • 96musculature of body
  • 60eye
  • 43nerve
  • 34embryo
  • 22vein
  • 20lung
  • 19spleen
  • 18blood
  • 18bodily fluid
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 453AMP
Genome assembly (visualization)
  • 296hg19
  • 245GRCh38
Lab
  • 393AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 20Bing Ren, UCSD
Audit category:
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 1missing controlled_by
Audit category:
  • 12inconsistent control read length
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

453 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver108167202311111
right lobe of liver831212
cell line
HepG28114112221
primary cell
hepatocyte4511
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
in vitro differentiated cells
hepatocyte13
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