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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 338ChIP-seq
Assay category
  • 338DNA binding
Target of assay
  • 338transcription factor
  • 108control
  • 103histone modification
  • 102histone
  • 82recombinant protein
  • 60narrow histone mark
  • 58RNA binding protein
  • 42broad histone mark
  • 23chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 241November, 2017
  • 49November, 2018
  • 33December, 2017
  • 11August, 2021
  • 4August, 2017
Available data
  • 333bigWig
  • 329bed narrowPeak
  • 327fastq
  • 326bam
  • 314bigBed narrowPeak
  • 44bed broadPeak
  • 44bigBed broadPeak
  • 3tar
  • 2bed bed3+
Organism
  • 338Homo sapiens
Biosample type
  • 297cell line
  • 39tissue
  • 2in vitro differentiated cells
Organ
  • 338liver
  • 51blood
  • 51bodily fluid
  • 40connective tissue
  • 19pancreas
  • 17adipose tissue
  • 17heart
  • 10kidney
  • 9epithelium
  • 9vasculature
  • 8blood vessel
  • 6spleen
  • 5artery
  • 3brain
  • 3embryo
  • 1eye
Project
  • 338AMP
Genome assembly (visualization)
  • 329hg19
  • 286GRCh38
Lab
  • 327AMP-T2D consortium
  • 11Bing Ren, UCSD
Audit category:
  • 27inconsistent control
Audit category:
  • 12missing controlled_by
Audit category:
  • 15inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

338 results

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Clear Filters
ChIP-seq
cell line
HepG2297
tissue
liver37
right lobe of liver2
in vitro differentiated cells
hepatocyte2
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