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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ATAC-seq
11
ChIP-seq
9
total RNA-seq
2
DNase-seq
Assay category
15
DNA accessibility
11
DNA binding
9
Transcription
Target of assay
25
histone
histone modification
16
broad histone mark
11
control
narrow histone mark
Date released
18
October, 2019
8
February, 2021
8
February, 2023
1
February, 2020
Available data
26
bam
11
bed narrowPeak
7
bigWig
5
tsv
4
bed bed3
4
txt
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
Organism
35
Homo sapiens
Biosample type
35
tissue
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
0
lymph node
Project
35
AMP
Genome assembly (visualization)
19
hg19
15
GRCh38
Lab
35
AMP-T2D consortium
target.investigated_as!
histone modification
narrow histone mark
BIOSAMPLE
ASSAY
35 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
tissue
tibial nerve
1
11
5
2
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
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