Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 19target gene predictions
  • 15chromatin state
  • 14candidate regulatory elements
  • 12binding sites
  • 7accessible chromatin
  • 5histone modifications
  • 1variant allelic effects
Date released
  • 42September, 2022
  • 14February, 2021
  • 6November, 2021
  • 4June, 2020
  • 3October, 2022
  • 2May, 2021
  • 1August, 2017
  • 1February, 2024
Available data
  • 59bed bed3+
  • 14bed bed9
  • 3bigWig
Organism
  • 73Homo sapiens
Collection Tags
  • 42EpiMap
  • 18ChIP-Atlas
  • 6AMP
  • 6T2DKP
  • 3DGA
  • 3ENCODE
Biosample type
  • 40primary cell
  • 28cell line
  • 3in vitro differentiated cells
  • 2tissue
Organ
  • 2887vasculature
  • 2837bodily fluid
  • 2828blood
  • 2828blood vessel
  • 2654vein
  • 906epithelium
  • 568kidney
  • 440connective tissue
  • 416brain
  • 302musculature of body
  • 266pancreas
  • 250lung
  • 231intestine
  • 223heart
  • 196limb
  • 185embryo
  • 163skin of body
  • 154liver
  • 138large intestine
  • 120extraembryonic component
  • 100eye
  • 91stomach
  • 88adipose tissue
  • 78bone element
  • 78uterus
  • 75artery
  • 73mammary gland
  • 66small intestine
  • 64prostate gland
  • 60placenta
  • 59adrenal gland
  • 49lymph node
  • 46penis
  • 46ureter
  • 41gonad
  • 40thymus
  • 35esophagus
  • 35spinal cord
  • 25spleen
  • 22lymphatic vessel
  • 22nerve
  • 21testis
  • 20lymphoid tissue
  • 19ovary
  • 19thyroid gland
  • 17skeleton
  • 15mouth
  • 14bronchus
  • 13pituitary gland
  • 12bone marrow
  • 10breast
  • 9urinary bladder
  • 8tongue
  • 8vagina
  • 5trachea
  • 4nose
  • 1pericardium
Project
  • 67AMP
  • 6ENCODE
Genome assembly (visualization)
  • 73hg19
  • 20GRCh38
software_used.software.name!
  • encode-ccres
BIOSAMPLE
TYPE

73 results

search-icontable-tab-icon
Clear Filters
target gene predictions
chromatin state
candidate regulatory elements
binding sites
accessible chromatin
histone modifications
variant allelic effects
primary cell
mammary gland epithelial cell433111
fibroblast of mammary gland111211
luminal epithelial cell of mammary gland3112
mammary epithelial cell1141
myoepithelial cell of mammary gland222
cell line
MCF-7655312
T47D222
in vitro differentiated cells
mammary gland epithelial cell111
tissue
mammary gland11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego