Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 28candidate regulatory elements
  • 19target gene predictions
  • 15chromatin state
  • 3binding sites
  • 1variant allelic effects
Date released
  • 42September, 2022
  • 14February, 2021
  • 3November, 2021
  • 3October, 2022
  • 2May, 2021
  • 1August, 2017
  • 1February, 2024
Available data
  • 52bed bed3+
  • 14bed bed9
Organism
  • 66Homo sapiens
Collection Tags
  • 42EpiMap
  • 17ENCODE
  • 3AMP
  • 3DGA
  • 3T2DKP
Biosample type
  • 35primary cell
  • 31cell line
Organ
  • 2856vasculature
  • 2805blood vessel
  • 2795bodily fluid
  • 2786blood
  • 2654vein
  • 688epithelium
  • 594kidney
  • 369brain
  • 350connective tissue
  • 340musculature of body
  • 290lung
  • 255intestine
  • 220heart
  • 220limb
  • 204pancreas
  • 180embryo
  • 164skin of body
  • 154large intestine
  • 130extraembryonic component
  • 114liver
  • 110stomach
  • 89adipose tissue
  • 81small intestine
  • 75uterus
  • 66adrenal gland
  • 66mammary gland
  • 64placenta
  • 61bone element
  • 60ureter
  • 58artery
  • 58prostate gland
  • 51penis
  • 45thymus
  • 42eye
  • 42gonad
  • 41esophagus
  • 40lymph node
  • 40spinal cord
  • 31spleen
  • 22nerve
  • 21lymphoid tissue
  • 21ovary
  • 21testis
  • 21thyroid gland
  • 18lymphatic vessel
  • 18mouth
  • 12breast
  • 12pituitary gland
  • 11bronchus
  • 10skeleton
  • 10vagina
  • 9tongue
  • 9urinary bladder
  • 7bone marrow
  • 3nose
  • 1pericardium
Project
  • 63AMP
  • 3ENCODE
Genome assembly (visualization)
  • 66hg19
  • 17GRCh38
software_used.software.name!
  • macs
BIOSAMPLE
TYPE

66 results

search-icontable-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
binding sites
variant allelic effects
primary cell
mammary gland epithelial cell3431
myoepithelial cell of mammary gland422
mammary epithelial cell3111
fibroblast of mammary gland2111
luminal epithelial cell of mammary gland131
cell line
MCF-79651
T47D322
MCF 10A3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego