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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
34
DNase-seq
15
ATAC-seq
10
total RNA-seq
6
Hi-C
5
RRBS
3
WGBS
2
pCHi-C
2
small RNA-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
50
DNA accessibility
45
DNA binding
13
Transcription
8
DNA methylation
6
3D chromatin structure
Target of assay
39
histone
39
histone modification
24
broad histone mark
15
narrow histone mark
control
6
transcription factor
3
other context
3
other post-translational modification
Date released
41
June, 2019
23
August, 2017
10
July, 2019
8
February, 2021
8
February, 2023
6
January, 2019
6
March, 2020
6
May, 2019
6
November, 2018
3
December, 2018
2
February, 2020
2
May, 2022
1
January, 2018
1
October, 2017
1
October, 2019
Available data
84
bigWig
82
bed narrowPeak
78
bam
60
bigBed narrowPeak
47
bed broadPeak
35
bed bed3+
34
bigBed broadPeak
18
fastq
13
tagAlign
10
tsv
6
bed bedMethyl
6
bigBed bedMethyl
5
txt
4
bed bed3
2
bedpe bed3+
2
hic
Organism
124
Homo sapiens
Biosample type
112
tissue
12
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
124
AMP
Genome assembly (visualization)
99
hg19
77
GRCh38
Lab
124
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
target.investigated_as!
control
BIOSAMPLE
ASSAY
124 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
WGBS
pCHi-C
small RNA-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
19
1
1
4
1
1
1
muscle of leg
6
13
1
muscle of arm
17
spleen
12
1
1
2
1
gastrocnemius medialis
1
4
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
1
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