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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
DNase-seq
6
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
53
DNA accessibility
9
Transcription
6
3D chromatin structure
6
DNA binding
6
DNA methylation
Target of assay
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
53
June, 2019
10
July, 2019
7
August, 2017
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
May, 2019
Available data
61
bam
59
bigWig
52
bed bed3+
51
bed broadPeak
51
bed narrowPeak
51
bigBed broadPeak
51
bigBed narrowPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
1
txt
Organism
81
Homo sapiens
Biosample type
75
tissue
6
primary cell
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
urinary bladder
Project
81
AMP
Genome assembly (visualization)
64
hg19
58
GRCh38
Lab
81
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
organ_slims!
urinary bladder
target.investigated_as!
histone
BIOSAMPLE
ASSAY
81 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
1
skeletal muscle tissue
3
1
4
1
1
1
1
renal pelvis
10
gastrocnemius medialis
4
1
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primary cell
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
1
1
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