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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
5
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
snATAC-seq
1
total RNA-seq
Assay category
39
DNA binding
35
DNA accessibility
6
3D chromatin structure
6
DNA methylation
1
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
7
July, 2019
7
May, 2019
3
March, 2020
1
January, 2018
1
May, 2022
Available data
63
bigWig
60
bed narrowPeak
52
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tsv
1
txt
Organism
88
Homo sapiens
Biosample type
75
tissue
13
primary cell
Organ
601
liver
449
pancreas
320
epithelium
265
brain
231
heart
226
kidney
208
connective tissue
171
vasculature
165
blood vessel
119
limb
90
adipose tissue
88
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
42
nerve
25
spleen
23
embryo
22
vein
18
ureter
13
bone element
12
skeleton
10
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
68
hg19
48
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
ATAC-seq
WGBS
pCHi-C
snATAC-seq
total RNA-seq
tissue
skeletal muscle tissue
22
4
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
1
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primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
1
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