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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 39ChIP-seq
  • 33DNase-seq
  • 6Hi-C
  • 5RRBS
  • 2total RNA-seq
  • 1ATAC-seq
  • 1WGBS
  • 1snATAC-seq
Assay category
  • 39DNA binding
  • 35DNA accessibility
  • 63D chromatin structure
  • 6DNA methylation
  • 2Transcription
Target of assay
  • 33histone
  • 33histone modification
  • 20broad histone mark
  • 13narrow histone mark
  • 6control
Date released
  • 43June, 2019
  • 26August, 2017
  • 7May, 2019
  • 6July, 2019
  • 4March, 2020
  • 1January, 2018
  • 1July, 2025
Available data
  • 64bigWig
  • 60bed narrowPeak
  • 53bam
  • 47bigBed narrowPeak
  • 46bed broadPeak
  • 34bed bed3+
  • 33bigBed broadPeak
  • 15tagAlign
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3tsv
  • 2bedpe bed3+
  • 2fastq
  • 2hic
  • 1tbi
Organism
  • 87Homo sapiens
Biosample type
  • 76tissue
  • 12primary cell
Organ
  • 808pancreas
  • 775liver
  • 627connective tissue
  • 474adipose tissue
  • 443epithelium
  • 368heart
  • 335kidney
  • 229vasculature
  • 223blood vessel
  • 215brain
  • 151bone element
  • 137artery
  • 119limb
  • 88musculature of body
  • 67blood
  • 67bodily fluid
  • 58eye
  • 42nerve
  • 35embryo
  • 24spleen
  • 21vein
  • 19lung
  • 18ureter
  • 8skeleton
  • 4gonad
  • 4ovary
  • 1bone marrow
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1thymus
Project
  • 88AMP
Genome assembly (visualization)
  • 68hg19
  • 50GRCh38
Lab
  • 87AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 9inconsistent ontology term
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

88 results

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Clear Filters
ChIP-seq
DNase-seq
Hi-C
RRBS
total RNA-seq
ATAC-seq
WGBS
snATAC-seq
tissue
skeletal muscle tissue22411
muscle of leg7131
muscle of arm17
gastrocnemius medialis4
psoas muscle22
primary cell
skeletal muscle satellite cell8
skeletal muscle cell211
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