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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
5
RRBS
2
total RNA-seq
1
ATAC-seq
1
WGBS
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
6
3D chromatin structure
6
DNA methylation
2
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
7
May, 2019
6
July, 2019
4
March, 2020
1
January, 2018
1
July, 2025
Available data
64
bigWig
60
bed narrowPeak
53
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
fastq
2
hic
1
tbi
Organism
87
Homo sapiens
Biosample type
76
tissue
12
primary cell
Organ
808
pancreas
775
liver
627
connective tissue
474
adipose tissue
443
epithelium
368
heart
335
kidney
229
vasculature
223
blood vessel
215
brain
151
bone element
137
artery
119
limb
88
musculature of body
67
blood
67
bodily fluid
58
eye
42
nerve
35
embryo
24
spleen
21
vein
19
lung
18
ureter
8
skeleton
4
gonad
4
ovary
1
bone marrow
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
88
AMP
Genome assembly (visualization)
68
hg19
50
GRCh38
Lab
87
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
9
inconsistent ontology term
replication_type!
anisogenic
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
total RNA-seq
ATAC-seq
WGBS
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
2
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primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
1
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