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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 33DNase-seq
  • 29ChIP-seq
  • 6Hi-C
  • 6total RNA-seq
  • 2RRBS
  • 2small RNA-seq
  • 1ATAC-seq
  • 1WGBS
  • 1pCHi-C
  • 1single cell RNA-seq
  • 1snATAC-seq
Assay category
  • 35DNA accessibility
  • 29DNA binding
  • 9Transcription
  • 63D chromatin structure
  • 3DNA methylation
Target of assay
  • 24histone
  • 24histone modification
  • 15broad histone mark
  • 9narrow histone mark
  • 5control
Date released
  • 34June, 2019
  • 24August, 2017
  • 9July, 2019
  • 6May, 2019
  • 5March, 2020
  • 2February, 2020
  • 2May, 2022
  • 1January, 2018
Available data
  • 59bigWig
  • 51bed narrowPeak
  • 47bam
  • 46bed broadPeak
  • 38bigBed narrowPeak
  • 34bed bed3+
  • 33bigBed broadPeak
  • 15tagAlign
  • 9tsv
  • 2bedpe bed3+
  • 2hic
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1txt
Organism
  • 83Homo sapiens
Biosample type
  • 79tissue
  • 4primary cell
Organ
  • 883pancreas
  • 673connective tissue
  • 491adipose tissue
  • 436epithelium
  • 381liver
  • 377heart
  • 315kidney
  • 261brain
  • 194vasculature
  • 193blood vessel
  • 158bone element
  • 134artery
  • 117limb
  • 83musculature of body
  • 57eye
  • 43nerve
  • 26embryo
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 13blood
  • 13bodily fluid
  • 5gonad
  • 5ovary
  • 4vein
  • 2intestine
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 83AMP
Genome assembly (visualization)
  • 61hg19
  • 44GRCh38
Lab
  • 83AMP-T2D consortium
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

83 results

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Clear Filters
DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue22121111
muscle of leg1361
muscle of arm17
gastrocnemius medialis41
psoas muscle221
primary cell
skeletal muscle cell11
skeletal muscle satellite cell11
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