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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
29
ChIP-seq
6
Hi-C
6
total RNA-seq
2
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
29
DNA binding
9
Transcription
6
3D chromatin structure
3
DNA methylation
Target of assay
24
histone
24
histone modification
15
broad histone mark
9
narrow histone mark
5
control
Date released
34
June, 2019
24
August, 2017
9
July, 2019
6
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
59
bigWig
51
bed narrowPeak
47
bam
46
bed broadPeak
38
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
Organism
83
Homo sapiens
Biosample type
79
tissue
4
primary cell
Organ
883
pancreas
673
connective tissue
491
adipose tissue
436
epithelium
381
liver
377
heart
315
kidney
261
brain
194
vasculature
193
blood vessel
158
bone element
134
artery
117
limb
83
musculature of body
57
eye
43
nerve
26
embryo
25
spleen
20
lung
18
ureter
16
skeleton
13
blood
13
bodily fluid
5
gonad
5
ovary
4
vein
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
83
AMP
Genome assembly (visualization)
61
hg19
44
GRCh38
Lab
83
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
replication_type!
isogenic
BIOSAMPLE
ASSAY
83 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
2
1
1
1
1
muscle of leg
13
6
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
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