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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 10ChIP-seq
  • 4total RNA-seq
  • 3RRBS
  • 2small RNA-seq
  • 1pCHi-C
  • 1single cell RNA-seq
  • 1snATAC-seq
Assay category
  • 10DNA binding
  • 7Transcription
  • 3DNA methylation
  • 1DNA accessibility
Target of assay
  • 9histone
  • 9histone modification
  • 5broad histone mark
  • 4narrow histone mark
  • 1control
Date released
  • 9June, 2019
  • 5July, 2019
  • 2August, 2017
  • 2February, 2020
  • 2May, 2022
  • 1March, 2020
  • 1May, 2019
Available data
  • 14bam
  • 13bigWig
  • 9bed narrowPeak
  • 9bigBed narrowPeak
  • 7tsv
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 2fastq
  • 1bed bed3+
  • 1txt
Organism
  • 22Homo sapiens
Biosample type
  • 12primary cell
  • 10tissue
Organ
  • 426liver
  • 201pancreas
  • 169epithelium
  • 96brain
  • 68connective tissue
  • 58blood
  • 58bodily fluid
  • 58kidney
  • 49vasculature
  • 44blood vessel
  • 41heart
  • 22musculature of body
  • 19vein
  • 17adipose tissue
  • 13embryo
  • 11artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 22AMP
Genome assembly (visualization)
  • 17hg19
  • 13GRCh38
Lab
  • 22AMP-T2D consortium
Audit category:
  • 8inconsistent ontology term
  • 1audit script error
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

22 results

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Clear Filters
ChIP-seq
total RNA-seq
RRBS
small RNA-seq
pCHi-C
single cell RNA-seq
snATAC-seq
primary cell
skeletal muscle satellite cell811
skeletal muscle cell11
tissue
skeletal muscle tissue12111
gastrocnemius medialis1
left ventricle myocardium1
muscle of leg1
psoas muscle1
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