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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 33DNase-seq
  • 29ChIP-seq
  • 6Hi-C
  • 2RRBS
  • 2total RNA-seq
  • 1ATAC-seq
  • 1WGBS
  • 1snATAC-seq
Assay category
  • 35DNA accessibility
  • 29DNA binding
  • 63D chromatin structure
  • 3DNA methylation
  • 2Transcription
Target of assay
  • 24histone
  • 24histone modification
  • 15broad histone mark
  • 9narrow histone mark
  • 5control
Date released
  • 34June, 2019
  • 24August, 2017
  • 6May, 2019
  • 5July, 2019
  • 4March, 2020
  • 1January, 2018
  • 1July, 2025
Available data
  • 55bigWig
  • 51bed narrowPeak
  • 46bed broadPeak
  • 43bam
  • 38bigBed narrowPeak
  • 34bed bed3+
  • 33bigBed broadPeak
  • 15tagAlign
  • 3tsv
  • 2bedpe bed3+
  • 2hic
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1tbi
Organism
  • 74Homo sapiens
Biosample type
  • 73tissue
  • 2primary cell
Organ
  • 745pancreas
  • 616connective tissue
  • 474adipose tissue
  • 365liver
  • 355epithelium
  • 352heart
  • 296kidney
  • 190brain
  • 187vasculature
  • 186blood vessel
  • 150bone element
  • 130artery
  • 114limb
  • 75musculature of body
  • 54eye
  • 42nerve
  • 24embryo
  • 24spleen
  • 19lung
  • 18ureter
  • 11blood
  • 11bodily fluid
  • 8skeleton
  • 4gonad
  • 4ovary
  • 3vein
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 75AMP
Genome assembly (visualization)
  • 56hg19
  • 41GRCh38
Lab
  • 74AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 1inconsistent ontology term
BIOSAMPLE
ASSAY

75 results

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Clear Filters
DNase-seq
ChIP-seq
Hi-C
RRBS
total RNA-seq
ATAC-seq
WGBS
snATAC-seq
tissue
skeletal muscle tissue22211
muscle of leg1361
muscle of arm17
gastrocnemius medialis4
psoas muscle22
primary cell
skeletal muscle cell11
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