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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 33ChIP-seq
  • 33DNase-seq
  • 6Hi-C
  • 6total RNA-seq
  • 5RRBS
  • 2small RNA-seq
  • 2snATAC-seq
  • 1ATAC-seq
  • 1WGBS
  • 1pCHi-C
  • 1single cell RNA-seq
Assay category
  • 36DNA accessibility
  • 33DNA binding
  • 9Transcription
  • 63D chromatin structure
  • 6DNA methylation
Target of assay
  • 33histone
  • 33histone modification
  • 20broad histone mark
  • 13narrow histone mark
  • control
Date released
  • 41June, 2019
  • 23August, 2017
  • 10July, 2019
  • 6May, 2019
  • 5March, 2020
  • 2February, 2020
  • 2May, 2022
  • 1January, 2018
  • 1July, 2025
Available data
  • 68bigWig
  • 60bed narrowPeak
  • 54bam
  • 47bigBed narrowPeak
  • 46bed broadPeak
  • 35bed bed3+
  • 33bigBed broadPeak
  • 13tagAlign
  • 10tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 2bedpe bed3+
  • 2fastq
  • 2hic
  • 1tbi
  • 1txt
Organism
  • 90Homo sapiens
Biosample type
  • 79tissue
  • 12primary cell
Organ
  • 893pancreas
  • 683liver
  • 649connective tissue
  • 494epithelium
  • 467adipose tissue
  • 373heart
  • 342kidney
  • 255brain
  • 214vasculature
  • 209blood vessel
  • 159bone element
  • 132artery
  • 105limb
  • 91musculature of body
  • 63blood
  • 63bodily fluid
  • 60eye
  • 32nerve
  • 30embryo
  • 20lung
  • 20vein
  • 18ureter
  • 17spleen
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 91AMP
Genome assembly (visualization)
  • 73hg19
  • 54GRCh38
Lab
  • 90AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 8inconsistent ontology term
  • 1audit script error
target.investigated_as!
  • control
BIOSAMPLE
ASSAY

91 results

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Clear Filters
ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue19141211
muscle of leg6131
muscle of arm17
gastrocnemius medialis41
psoas muscle221
primary cell
skeletal muscle satellite cell711
skeletal muscle cell111
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