Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 39ChIP-seq
  • 33DNase-seq
  • 6Hi-C
  • 6total RNA-seq
  • 5RRBS
  • 2small RNA-seq
  • 2snATAC-seq
  • 1ATAC-seq
  • 1WGBS
  • 1pCHi-C
  • 1single cell RNA-seq
Assay category
  • 39DNA binding
  • 36DNA accessibility
  • 9Transcription
  • 63D chromatin structure
  • 6DNA methylation
Target of assay
  • 33histone
  • 33histone modification
  • 20broad histone mark
  • 13narrow histone mark
  • 6control
Date released
  • 43June, 2019
  • 26August, 2017
  • 10July, 2019
  • 7May, 2019
  • 5March, 2020
  • 2February, 2020
  • 2May, 2022
  • 1January, 2018
  • 1July, 2025
Available data
  • 68bigWig
  • 60bed narrowPeak
  • 57bam
  • 47bigBed narrowPeak
  • 46bed broadPeak
  • 35bed bed3+
  • 33bigBed broadPeak
  • 15tagAlign
  • 10tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 2bedpe bed3+
  • 2fastq
  • 2hic
  • 1tbi
  • 1txt
Organism
  • 96Homo sapiens
Biosample type
  • 83tissue
  • 14primary cell
Organ
  • 946pancreas
  • 791liver
  • 684connective tissue
  • 524epithelium
  • 491adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 97musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 97AMP
Genome assembly (visualization)
  • 73hg19
  • 54GRCh38
Lab
  • 96AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 9inconsistent ontology term
  • 1audit script error
BIOSAMPLE
ASSAY

97 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue22141211
muscle of leg7131
muscle of arm17
gastrocnemius medialis41
psoas muscle221
forelimb muscle1
hindlimb muscle1
left ventricle myocardium1
primary cell
skeletal muscle satellite cell811
skeletal muscle cell211
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego