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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
5
total RNA-seq
4
DNase-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
13
DNA binding
6
DNA accessibility
5
Transcription
2
3D chromatin structure
Target of assay
39
histone
histone modification
25
broad histone mark
14
narrow histone mark
13
control
Date released
24
October, 2019
1
February, 2020
1
March, 2020
Available data
23
bam
10
bigWig
6
bed narrowPeak
5
bigBed narrowPeak
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
26
Homo sapiens
Biosample type
19
tissue
7
primary cell
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
26
AMP
Genome assembly (visualization)
12
hg19
9
GRCh38
Lab
26
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
thymus
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
tissue
tibial nerve
11
5
2
1
primary cell
endothelial cell of umbilical vein
2
2
2
1
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