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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 283total RNA-seq
  • 153ChIP-seq
  • 62ATAC-seq
  • 14single cell RNA-seq
  • 11snATAC-seq
  • 8DNase-seq
  • 5Hi-C
  • 4MeRIP-seq
  • 4WGBS
  • 2FAIRE-seq
  • 2RRBS
  • 2small RNA-seq
  • 1pCHi-C
Assay category
  • 299Transcription
  • 153DNA binding
  • 83DNA accessibility
  • 6DNA methylation
  • 53D chromatin structure
Target of assay
  • 103histone
  • 103histone modification
  • 56broad histone mark
  • 47narrow histone mark
  • 35control
  • 17transcription factor
  • 8RNA binding protein
  • 2nucleotide modification
Date released
  • 159August, 2017
  • 126July, 2018
  • 51October, 2018
  • 39November, 2019
  • 37May, 2021
  • 24May, 2022
  • 18February, 2023
  • 18October, 2019
  • 11September, 2018
  • 9March, 2020
  • 8April, 2018
  • 8January, 2021
  • 7November, 2018
  • 6July, 2019
  • 6September, 2017
  • 5March, 2019
  • 5October, 2017
  • 4June, 2019
  • 4November, 2020
  • 2August, 2021
  • 2May, 2019
  • 1August, 2022
  • 1February, 2020
Available data
  • 474bam
  • 412bigWig
  • 283tsv
  • 243fastq
  • 141bed narrowPeak
  • 69bigBed narrowPeak
  • 29bed bed3+
  • 21bed broadPeak
  • 16tagAlign
  • 7bigBed broadPeak
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 3bedpe bed3+
  • 3hic
  • 1bedpe
  • 1hdf5
Organism
  • 544Homo sapiens
Biosample type
  • 505tissue
  • 31primary cell
  • 15cell line
Organ
  • 946pancreas
  • 791liver
  • 684connective tissue
  • epithelium
  • 491adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 97musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 521AMP
  • 30T1D
Genome assembly (visualization)
  • 452hg19
  • 425GRCh38
Lab
  • 488AMP-T2D consortium
  • 51Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
  • 1audit script error
Audit category:
  • 33missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 2inconsistent assembly
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

551 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans27850586713411
body of pancreas3354422
pancreas2164212111
endocrine pancreas16
primary cell
pancreatic endocrine cell23
pancreatic stellate cell4
co-expressing pancreatic endocrine cell2
unclassified pancreatic endocrine cell2
cell line
Panc11311
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