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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 397total RNA-seq
  • 80single cell RNA-seq
  • 10MeRIP-seq
  • 7ChIP-seq
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
Assay category
  • 479Transcription
  • 7DNA binding
Target of assay
  • 6control
  • 6histone
  • 6histone modification
  • 5nucleotide modification
  • 4broad histone mark
  • 2narrow histone mark
Date released
  • 157July, 2018
  • 96August, 2017
  • 43February, 2023
  • 41May, 2021
  • 39April, 2018
  • 26February, 2021
  • 26September, 2018
  • 20November, 2019
  • 16September, 2020
  • 10November, 2020
  • 6May, 2022
  • 5March, 2020
  • 4July, 2019
  • 3August, 2018
  • 2October, 2018
  • 1August, 2021
  • 1February, 2020
  • 1June, 2018
Available data
  • 419bam
  • 412bigWig
  • 408tsv
  • 260fastq
  • 7tagAlign
  • 6bed broadPeak
  • 6bed narrowPeak
  • 6bigBed narrowPeak
  • 6txt
Organism
  • 489Homo sapiens
Biosample type
  • 302tissue
  • 155primary cell
  • 40cell line
Organ
  • 497pancreas
  • 476connective tissue
  • 401adipose tissue
  • 204epithelium
  • 190liver
  • 162heart
  • 146bone element
  • 128kidney
  • 65blood vessel
  • 65vasculature
  • 56artery
  • 21brain
  • 19eye
  • 14embryo
  • 10lung
  • 8musculature of body
  • 4skeleton
  • 3limb
  • 1nerve
  • 1spinal cord
Project
  • 435AMP
  • 53HPAP
  • 9T1D
Genome assembly (visualization)
  • 412GRCh38
  • 412hg19
Lab
  • 421AMP-T2D consortium
  • 53Klaus Kaestner, Upenn
  • 12Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 1Bing Ren, UCSD
Audit category:
  • 44inconsistent ontology term
Audit category:
  • 1inconsistent assembly
replicates.library.nucleic_acid_term_name!
  • DNA
BIOSAMPLE
ASSAY

497 results

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Clear Filters
total RNA-seq
single cell RNA-seq
MeRIP-seq
ChIP-seq
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
tissue
islet of Langerhans27864
pancreas27
body of pancreas32
primary cell
pancreatic alpha cell5212
pancreatic beta cell2112
pancreatic acinar cell412
pancreatic ductal cell410
pancreatic delta cell11
cell line
EndoC_BH13361
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