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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
80
single cell RNA-seq
10
MeRIP-seq
7
ChIP-seq
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
479
Transcription
7
DNA binding
Target of assay
6
control
6
histone
6
histone modification
5
nucleotide modification
4
broad histone mark
2
narrow histone mark
Date released
157
July, 2018
96
August, 2017
43
February, 2023
41
May, 2021
39
April, 2018
26
February, 2021
26
September, 2018
20
November, 2019
16
September, 2020
10
November, 2020
6
May, 2022
5
March, 2020
4
July, 2019
3
August, 2018
2
October, 2018
1
August, 2021
1
February, 2020
1
June, 2018
Available data
419
bam
412
bigWig
408
tsv
260
fastq
7
tagAlign
6
bed broadPeak
6
bed narrowPeak
6
bigBed narrowPeak
6
txt
Organism
489
Homo sapiens
Biosample type
302
tissue
155
primary cell
40
cell line
Organ
497
pancreas
476
connective tissue
401
adipose tissue
204
epithelium
190
liver
162
heart
146
bone element
128
kidney
65
blood vessel
65
vasculature
56
artery
21
brain
19
eye
14
embryo
10
lung
8
musculature of body
4
skeleton
3
limb
1
nerve
1
spinal cord
Project
435
AMP
53
HPAP
9
T1D
Genome assembly (visualization)
412
GRCh38
412
hg19
Lab
421
AMP-T2D consortium
53
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
44
inconsistent ontology term
Audit category:
1
inconsistent assembly
replicates.library.nucleic_acid_term_name!
DNA
BIOSAMPLE
ASSAY
497 results
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total RNA-seq
single cell RNA-seq
MeRIP-seq
ChIP-seq
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
tissue
islet of Langerhans
278
6
4
pancreas
2
7
body of pancreas
3
2
primary cell
pancreatic alpha cell
52
12
pancreatic beta cell
21
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
33
6
1
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