Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 385total RNA-seq
  • 195ChIP-seq
  • 134ATAC-seq
  • 51WGBS
  • 10single cell RNA-seq
  • 9snATAC-seq
  • 7DNase-seq
  • 6MeRIP-seq
  • 3Hi-C
  • 2Capture-C
  • 2RRBS
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1FAIRE-seq
Assay category
  • 397Transcription
  • 195DNA binding
  • 151DNA accessibility
  • 53DNA methylation
  • 33D chromatin structure
Target of assay
  • 137histone
  • 137histone modification
  • 72broad histone mark
  • 65narrow histone mark
  • 49control
  • 12transcription factor
  • 7RNA binding protein
  • 3nucleotide modification
Date released
  • 169August, 2017
  • 121July, 2018
  • 104May, 2022
  • 72September, 2018
  • 61May, 2021
  • 55November, 2019
  • 52October, 2018
  • 38February, 2023
  • 32February, 2021
  • 19September, 2020
  • 18October, 2019
  • 9September, 2017
  • 8January, 2021
  • 7August, 2020
  • 6April, 2018
  • 6July, 2019
  • 6November, 2018
  • 6November, 2020
  • 5March, 2020
  • 4June, 2019
  • 4October, 2017
  • 2August, 2021
  • 2May, 2019
  • 1August, 2022
  • 1June, 2018
Available data
  • 590bam
  • 524bigWig
  • 377fastq
  • 340tsv
  • 200bed narrowPeak
  • 88bigBed narrowPeak
  • 80zippedFastqFolder
  • 19bed broadPeak
  • 19tagAlign
  • 9bed bed3+
  • 7bigBed broadPeak
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 2bedpe bed3+
  • 2hic
  • 1hdf5
Organism
  • 800Homo sapiens
Biosample type
  • 434tissue
  • 279primary cell
  • 92cell line
  • 3in vitro differentiated cells
Organ
  • 808pancreas
  • 775liver
  • 627connective tissue
  • 474adipose tissue
  • 443epithelium
  • 368heart
  • 335kidney
  • 229vasculature
  • 223blood vessel
  • 215brain
  • 151bone element
  • 137artery
  • 119limb
  • 87musculature of body
  • 67blood
  • 67bodily fluid
  • 58eye
  • 42nerve
  • 35embryo
  • 24spleen
  • 21vein
  • 19lung
  • 18ureter
  • 8skeleton
  • 4gonad
  • 4ovary
  • 1bone marrow
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1thymus
Project
  • 647AMP
  • 149HPAP
  • 12T1D
Genome assembly (visualization)
  • 550hg19
  • 535GRCh38
Lab
  • 620AMP-T2D consortium
  • 149Klaus Kaestner, Upenn
  • 33Kyle Gaulton, UCSD
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 77inconsistent ontology term
  • 1audit script error
Audit category:
  • 44missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 2inconsistent assembly
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

808 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
DNase-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
tissue
islet of Langerhans26828405111
body of pancreas2354242
pancreas1152421
endocrine pancreas16
primary cell
pancreatic alpha cell521335311
pancreatic beta cell211323161
pancreatic acinar cell4894
pancreatic endocrine cell23
pancreatic ductal cell41341
cell line
EndoC_BH13315196121
Panc11311
in vitro differentiated cells
pancreatic PP cell3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego