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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 395total RNA-seq
  • 197ChIP-seq
  • 131ATAC-seq
  • 80single cell RNA-seq
  • 45WGBS
  • 8Hi-C
  • 8snATAC-seq
  • 7DNase-seq
  • 4MeRIP-seq
  • 2Capture-C
  • 2FAIRE-seq
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1pCHi-C
Assay category
  • 477Transcription
  • 197DNA binding
  • 148DNA accessibility
  • 45DNA methylation
  • 83D chromatin structure
Target of assay
  • 135histone
  • 135histone modification
  • 70broad histone mark
  • 65narrow histone mark
  • 45control
  • 19transcription factor
  • 9RNA binding protein
  • 2nucleotide modification
Date released
  • 187August, 2017
  • 157July, 2018
  • 104May, 2022
  • 72September, 2018
  • 60May, 2021
  • 56February, 2023
  • 46October, 2018
  • 39April, 2018
  • 36November, 2019
  • 26February, 2021
  • 19September, 2020
  • 11September, 2017
  • 9March, 2020
  • 7August, 2020
  • 7November, 2018
  • 5January, 2021
  • 5March, 2019
  • 5October, 2017
  • 5October, 2019
  • 4August, 2021
  • 4July, 2019
  • 4June, 2019
  • 4November, 2020
  • 3August, 2018
  • 3October, 2022
  • 2May, 2019
  • 1August, 2022
  • 1February, 2020
  • 1June, 2018
Available data
  • 646bam
  • 602bigWig
  • 457fastq
  • 408tsv
  • 179bed narrowPeak
  • 80zippedFastqFolder
  • 77bigBed narrowPeak
  • 27bed bed3+
  • 20bed broadPeak
  • 19tagAlign
  • 7bedpe bed3+
  • 7hic
  • 6bigBed broadPeak
  • 6txt
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3cool
  • 1bedpe
Organism
  • 875Homo sapiens
Biosample type
  • 474tissue
  • 339primary cell
  • 67cell line
  • 3in vitro differentiated cells
Organ
  • 883pancreas
  • 673connective tissue
  • 491adipose tissue
  • 436epithelium
  • 381liver
  • 377heart
  • 315kidney
  • 261brain
  • 194vasculature
  • 193blood vessel
  • 158bone element
  • 134artery
  • 117limb
  • 83musculature of body
  • 57eye
  • 43nerve
  • 26embryo
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 13blood
  • 13bodily fluid
  • 5gonad
  • 5ovary
  • 4vein
  • 2intestine
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 710AMP
  • 146HPAP
  • 27T1D
Genome assembly (visualization)
  • 616hg19
  • 597GRCh38
Lab
  • 677AMP-T2D consortium
  • 146Klaus Kaestner, Upenn
  • 48Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 69inconsistent ontology term
  • 4audit script error
Audit category:
  • 54missing controlled_by
Audit category:
  • 8inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

883 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
Hi-C
snATAC-seq
DNase-seq
MeRIP-seq
Capture-C
FAIRE-seq
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans2785039636141
body of pancreas3284242
pancreas216212211
endocrine pancreas16
primary cell
pancreatic alpha cell52133512251
pancreatic beta cell21122312161
pancreatic acinar cell489121
pancreatic ductal cell413410
pancreatic endocrine cell23
cell line
EndoC_BH1311317121
Panc12
in vitro differentiated cells
pancreatic PP cell3
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