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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
single cell RNA-seq
44
ChIP-seq
39
ATAC-seq
14
total RNA-seq
10
MeRIP-seq
7
Hi-C
6
WGBS
5
snATAC-seq
2
DNase-seq
2
RRBS
1
FAIRE-seq
1
pCHi-C
Assay category
84
Transcription
47
DNA accessibility
44
DNA binding
8
DNA methylation
7
3D chromatin structure
Target of assay
30
histone
30
histone modification
16
narrow histone mark
14
broad histone mark
12
control
7
transcription factor
5
nucleotide modification
2
RNA binding protein
Date released
36
July, 2018
33
April, 2018
20
August, 2017
19
November, 2019
18
February, 2023
14
March, 2020
13
October, 2019
10
November, 2020
8
October, 2018
6
February, 2021
5
March, 2019
3
August, 2018
3
January, 2021
3
October, 2022
2
August, 2021
2
July, 2019
2
September, 2017
1
February, 2020
1
May, 2021
1
November, 2018
1
October, 2017
Available data
142
bam
120
bigWig
108
fastq
86
tsv
49
bed narrowPeak
22
bed bed3+
17
bigBed narrowPeak
5
bedpe bed3+
5
hic
3
bed broadPeak
3
cool
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe
1
bigBed broadPeak
1
hdf5
Organism
201
Homo sapiens
Biosample type
102
tissue
74
primary cell
25
cell line
Organ
426
liver
201
pancreas
169
epithelium
96
brain
68
connective tissue
58
blood
58
bodily fluid
58
kidney
49
vasculature
44
blood vessel
41
heart
22
musculature of body
19
vein
17
adipose tissue
13
embryo
11
artery
9
bone element
8
limb
8
skeleton
7
eye
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
nerve
1
ovary
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
163
AMP
29
T1D
9
HPAP
Genome assembly (visualization)
150
hg19
138
GRCh38
Lab
153
AMP-T2D consortium
21
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Klaus Kaestner, Upenn
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
16
inconsistent ontology term
3
audit script error
Audit category:
10
missing controlled_by
Audit category:
1
inconsistent assembly
1
inconsistent control read length
replication_type!
unreplicated
BIOSAMPLE
ASSAY
201 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
MeRIP-seq
Hi-C
WGBS
snATAC-seq
DNase-seq
RRBS
FAIRE-seq
pCHi-C
tissue
islet of Langerhans
6
22
37
10
4
2
3
1
1
body of pancreas
7
1
pancreas
1
1
1
2
1
1
1
primary cell
pancreatic alpha cell
11
1
6
pancreatic beta cell
11
1
1
pancreatic delta cell
10
pancreatic acinar cell
8
1
pancreatic ductal cell
9
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cell line
Panc1
11
1
1
EndoC_BH1
2
2
2
6
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