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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 70single cell RNA-seq
  • 44ChIP-seq
  • 39ATAC-seq
  • 14total RNA-seq
  • 10MeRIP-seq
  • 7Hi-C
  • 6WGBS
  • 5snATAC-seq
  • 2DNase-seq
  • 2RRBS
  • 1FAIRE-seq
  • 1pCHi-C
Assay category
  • 84Transcription
  • 47DNA accessibility
  • 44DNA binding
  • 8DNA methylation
  • 73D chromatin structure
Target of assay
  • 30histone
  • 30histone modification
  • 16narrow histone mark
  • 14broad histone mark
  • 12control
  • 7transcription factor
  • 5nucleotide modification
  • 2RNA binding protein
Date released
  • 36July, 2018
  • 33April, 2018
  • 20August, 2017
  • 19November, 2019
  • 18February, 2023
  • 14March, 2020
  • 13October, 2019
  • 10November, 2020
  • 8October, 2018
  • 6February, 2021
  • 5March, 2019
  • 3August, 2018
  • 3January, 2021
  • 3October, 2022
  • 2August, 2021
  • 2July, 2019
  • 2September, 2017
  • 1February, 2020
  • 1May, 2021
  • 1November, 2018
  • 1October, 2017
Available data
  • 142bam
  • 120bigWig
  • 108fastq
  • 86tsv
  • 49bed narrowPeak
  • 22bed bed3+
  • 17bigBed narrowPeak
  • 5bedpe bed3+
  • 5hic
  • 3bed broadPeak
  • 3cool
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bedpe
  • 1bigBed broadPeak
  • 1hdf5
Organism
  • 201Homo sapiens
Biosample type
  • 102tissue
  • 74primary cell
  • 25cell line
Organ
  • 426liver
  • 201pancreas
  • 169epithelium
  • 96brain
  • 68connective tissue
  • 58blood
  • 58bodily fluid
  • 58kidney
  • 49vasculature
  • 44blood vessel
  • 41heart
  • 22musculature of body
  • 19vein
  • 17adipose tissue
  • 13embryo
  • 11artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 163AMP
  • 29T1D
  • 9HPAP
Genome assembly (visualization)
  • 150hg19
  • 138GRCh38
Lab
  • 153AMP-T2D consortium
  • 21Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 4Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 16inconsistent ontology term
  • 3audit script error
Audit category:
  • 10missing controlled_by
Audit category:
  • 1inconsistent assembly
  • 1inconsistent control read length
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

201 results

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Clear Filters
single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
MeRIP-seq
Hi-C
WGBS
snATAC-seq
DNase-seq
RRBS
FAIRE-seq
pCHi-C
tissue
islet of Langerhans622371042311
body of pancreas71
pancreas1112111
primary cell
pancreatic alpha cell1116
pancreatic beta cell1111
pancreatic delta cell10
pancreatic acinar cell81
pancreatic ductal cell9
cell line
Panc11111
EndoC_BH12226
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