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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 70single cell RNA-seq
  • 23ChIP-seq
  • 18ATAC-seq
  • 12total RNA-seq
  • 6Hi-C
  • 4MeRIP-seq
  • 2snATAC-seq
  • 1DNase-seq
  • 1FAIRE-seq
  • 1pCHi-C
Assay category
  • 82Transcription
  • 23DNA binding
  • 22DNA accessibility
  • 63D chromatin structure
Target of assay
  • 14histone
  • 14histone modification
  • 8narrow histone mark
  • 7transcription factor
  • 6broad histone mark
  • 4control
  • 2RNA binding protein
  • 2nucleotide modification
Date released
  • 36July, 2018
  • 33April, 2018
  • 19August, 2017
  • 18February, 2023
  • 9March, 2020
  • 5March, 2019
  • 4November, 2020
  • 3August, 2018
  • 3October, 2022
  • 2August, 2021
  • 2September, 2017
  • 1February, 2020
  • 1November, 2018
  • 1October, 2017
  • 1October, 2018
Available data
  • 99bam
  • 99bigWig
  • 94fastq
  • 77tsv
  • 20bed bed3+
  • 14bed narrowPeak
  • 5bedpe bed3+
  • 5hic
  • 3bigBed narrowPeak
  • 3cool
  • 2bed broadPeak
  • 1bedpe
Organism
  • 138Homo sapiens
Biosample type
  • 71tissue
  • 67primary cell
Organ
  • 138pancreas
  • 81epithelium
  • 71brain
  • 57connective tissue
  • 25heart
  • 19kidney
  • 17adipose tissue
  • 16liver
  • 9musculature of body
  • 8bone element
  • 8skeleton
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 3eye
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 113AMP
  • 22T1D
  • 3HPAP
Genome assembly (visualization)
  • 108hg19
  • 100GRCh38
Lab
  • 105AMP-T2D consortium
  • 18Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
  • 3audit script error
Audit category:
  • 10missing controlled_by
BIOSAMPLE
ASSAY

138 results

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Clear Filters
single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
MeRIP-seq
snATAC-seq
DNase-seq
FAIRE-seq
pCHi-C
tissue
islet of Langerhans62218102421
pancreas11111
body of pancreas1
primary cell
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
pancreatic ductal cell9
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