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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
single cell RNA-seq
23
ChIP-seq
18
ATAC-seq
12
total RNA-seq
6
Hi-C
4
MeRIP-seq
2
snATAC-seq
1
DNase-seq
1
FAIRE-seq
1
pCHi-C
Assay category
82
Transcription
23
DNA binding
22
DNA accessibility
6
3D chromatin structure
Target of assay
14
histone
14
histone modification
8
narrow histone mark
7
transcription factor
6
broad histone mark
4
control
2
RNA binding protein
2
nucleotide modification
Date released
36
July, 2018
33
April, 2018
19
August, 2017
18
February, 2023
9
March, 2020
5
March, 2019
4
November, 2020
3
August, 2018
3
October, 2022
2
August, 2021
2
September, 2017
1
February, 2020
1
November, 2018
1
October, 2017
1
October, 2018
Available data
99
bam
99
bigWig
94
fastq
77
tsv
20
bed bed3+
14
bed narrowPeak
5
bedpe bed3+
5
hic
3
bigBed narrowPeak
3
cool
2
bed broadPeak
1
bedpe
Organism
138
Homo sapiens
Biosample type
71
tissue
67
primary cell
Organ
138
pancreas
81
epithelium
71
brain
57
connective tissue
25
heart
19
kidney
17
adipose tissue
16
liver
9
musculature of body
8
bone element
8
skeleton
7
blood vessel
7
vasculature
4
artery
3
eye
3
limb
2
blood
2
bodily fluid
2
embryo
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
113
AMP
22
T1D
3
HPAP
Genome assembly (visualization)
108
hg19
100
GRCh38
Lab
105
AMP-T2D consortium
18
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Klaus Kaestner, Upenn
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
3
audit script error
Audit category:
10
missing controlled_by
BIOSAMPLE
ASSAY
138 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
MeRIP-seq
snATAC-seq
DNase-seq
FAIRE-seq
pCHi-C
tissue
islet of Langerhans
6
22
18
10
2
4
2
1
pancreas
1
1
1
1
1
body of pancreas
1
primary cell
pancreatic alpha cell
11
1
pancreatic beta cell
11
1
pancreatic delta cell
10
pancreatic acinar cell
8
1
pancreatic ductal cell
9
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