Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 21ATAC-seq
  • 21ChIP-seq
  • 6MeRIP-seq
  • 6WGBS
  • 3snATAC-seq
  • 2RRBS
  • 2total RNA-seq
  • 1DNase-seq
  • 1Hi-C
Assay category
  • 25DNA accessibility
  • 21DNA binding
  • 8DNA methylation
  • 2Transcription
  • 13D chromatin structure
Target of assay
  • 16histone
  • 16histone modification
  • 8broad histone mark
  • 8control
  • 8narrow histone mark
  • 3nucleotide modification
Date released
  • 19November, 2019
  • 13October, 2019
  • 7October, 2018
  • 6February, 2021
  • 6November, 2020
  • 5March, 2020
  • 3January, 2021
  • 2July, 2019
  • 1August, 2017
  • 1May, 2021
Available data
  • 43bam
  • 35bed narrowPeak
  • 21bigWig
  • 14bigBed narrowPeak
  • 14fastq
  • 9tsv
  • 2bed bed3+
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed broadPeak
  • 1bigBed broadPeak
  • 1hdf5
Organism
  • 63Homo sapiens
Biosample type
  • 31tissue
  • 25cell line
  • 7primary cell
Organ
  • 410liver
  • 88epithelium
  • 63pancreas
  • 56blood
  • 56bodily fluid
  • 42vasculature
  • 39kidney
  • 37blood vessel
  • 25brain
  • 18vein
  • 16heart
  • 13musculature of body
  • 11connective tissue
  • 11embryo
  • 7artery
  • 5limb
  • 4eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 50AMP
  • 7T1D
  • 6HPAP
Genome assembly (visualization)
  • 42hg19
  • 38GRCh38
Lab
  • 48AMP-T2D consortium
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 3Kyle Gaulton, UCSD
Audit category:
  • 12inconsistent ontology term
Audit category:
  • 1inconsistent assembly
  • 1inconsistent control read length
BIOSAMPLE
ASSAY

63 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
MeRIP-seq
WGBS
snATAC-seq
RRBS
total RNA-seq
DNase-seq
Hi-C
tissue
islet of Langerhans1911
body of pancreas7
pancreas21
cell line
Panc11111
EndoC_BH12262
primary cell
pancreatic alpha cell6
pancreatic beta cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego