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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ATAC-seq
21
ChIP-seq
6
MeRIP-seq
6
WGBS
3
snATAC-seq
2
RRBS
2
total RNA-seq
1
DNase-seq
1
Hi-C
Assay category
25
DNA accessibility
21
DNA binding
8
DNA methylation
2
Transcription
1
3D chromatin structure
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
control
8
narrow histone mark
3
nucleotide modification
Date released
19
November, 2019
13
October, 2019
7
October, 2018
6
February, 2021
6
November, 2020
5
March, 2020
3
January, 2021
2
July, 2019
1
August, 2017
1
May, 2021
Available data
43
bam
35
bed narrowPeak
21
bigWig
14
bigBed narrowPeak
14
fastq
9
tsv
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
63
Homo sapiens
Biosample type
31
tissue
25
cell line
7
primary cell
Organ
410
liver
88
epithelium
63
pancreas
56
blood
56
bodily fluid
42
vasculature
39
kidney
37
blood vessel
25
brain
18
vein
16
heart
13
musculature of body
11
connective tissue
11
embryo
7
artery
5
limb
4
eye
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
1
thymus
Project
50
AMP
7
T1D
6
HPAP
Genome assembly (visualization)
42
hg19
38
GRCh38
Lab
48
AMP-T2D consortium
6
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
3
Kyle Gaulton, UCSD
Audit category:
12
inconsistent ontology term
Audit category:
1
inconsistent assembly
1
inconsistent control read length
BIOSAMPLE
ASSAY
63 results
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ATAC-seq
ChIP-seq
MeRIP-seq
WGBS
snATAC-seq
RRBS
total RNA-seq
DNase-seq
Hi-C
tissue
islet of Langerhans
19
1
1
body of pancreas
7
pancreas
2
1
cell line
Panc1
11
1
1
EndoC_BH1
2
2
6
2
primary cell
pancreatic alpha cell
6
pancreatic beta cell
1
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