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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 383total RNA-seq
  • 174ChIP-seq
  • 113ATAC-seq
  • 45WGBS
  • 10single cell RNA-seq
  • 6DNase-seq
  • 6snATAC-seq
  • 2Capture-C
  • 2Hi-C
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1FAIRE-seq
Assay category
  • 395Transcription
  • 174DNA binding
  • 126DNA accessibility
  • 45DNA methylation
  • 23D chromatin structure
Target of assay
  • 121histone
  • 121histone modification
  • 64broad histone mark
  • 57narrow histone mark
  • 41control
  • 12transcription factor
  • 7RNA binding protein
Date released
  • 168August, 2017
  • 121July, 2018
  • 104May, 2022
  • 72September, 2018
  • 60May, 2021
  • 45October, 2018
  • 38February, 2023
  • 36November, 2019
  • 26February, 2021
  • 19September, 2020
  • 9September, 2017
  • 7August, 2020
  • 6April, 2018
  • 6November, 2018
  • 5January, 2021
  • 5October, 2019
  • 4July, 2019
  • 4June, 2019
  • 4October, 2017
  • 2August, 2021
  • 2May, 2019
  • 1August, 2022
  • 1June, 2018
Available data
  • 547bam
  • 503bigWig
  • 363fastq
  • 331tsv
  • 165bed narrowPeak
  • 80zippedFastqFolder
  • 74bigBed narrowPeak
  • 19tagAlign
  • 18bed broadPeak
  • 7bed bed3+
  • 6bigBed broadPeak
  • 6txt
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 2bedpe bed3+
  • 2hic
Organism
  • 737Homo sapiens
Biosample type
  • 403tissue
  • 272primary cell
  • 67cell line
  • 3in vitro differentiated cells
Organ
  • 745pancreas
  • 616connective tissue
  • 474adipose tissue
  • 365liver
  • 355epithelium
  • 352heart
  • 296kidney
  • 190brain
  • 187vasculature
  • 186blood vessel
  • 150bone element
  • 130artery
  • 114limb
  • 74musculature of body
  • 54eye
  • 42nerve
  • 24embryo
  • 24spleen
  • 19lung
  • 18ureter
  • 11blood
  • 11bodily fluid
  • 8skeleton
  • 4gonad
  • 4ovary
  • 3vein
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 597AMP
  • 143HPAP
  • 5T1D
Genome assembly (visualization)
  • 508hg19
  • 497GRCh38
Lab
  • 572AMP-T2D consortium
  • 143Klaus Kaestner, Upenn
  • 30Kyle Gaulton, UCSD
Audit category:
  • 65inconsistent ontology term
  • 1audit script error
Audit category:
  • 44missing controlled_by
Audit category:
  • 8inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

745 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
DNase-seq
snATAC-seq
Capture-C
Hi-C
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
tissue
islet of Langerhans2682821411
body of pancreas2284242
pancreas115222
endocrine pancreas16
primary cell
pancreatic alpha cell521335251
pancreatic beta cell211223161
pancreatic acinar cell4894
pancreatic endocrine cell23
pancreatic ductal cell41341
cell line
EndoC_BH1311317211
Panc12
in vitro differentiated cells
pancreatic PP cell3
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