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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 397total RNA-seq
  • 152ATAC-seq
  • 140ChIP-seq
  • 80single cell RNA-seq
  • 51WGBS
  • 11snATAC-seq
  • 10MeRIP-seq
  • 9Hi-C
  • 8DNase-seq
  • 2Capture-C
  • 2FAIRE-seq
  • 2RRBS
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1pCHi-C
Assay category
  • 479Transcription
  • 173DNA accessibility
  • 140DNA binding
  • 53DNA methylation
  • 93D chromatin structure
Target of assay
  • 151histone
  • 151histone modification
  • broad histone mark
  • 73narrow histone mark
  • 53control
  • 19transcription factor
  • 9RNA binding protein
  • 5nucleotide modification
Date released
  • 157July, 2018
  • 156August, 2017
  • 104May, 2022
  • 61May, 2021
  • 56February, 2023
  • 55September, 2018
  • 49November, 2019
  • 39April, 2018
  • 34October, 2018
  • 32February, 2021
  • 19September, 2020
  • 14March, 2020
  • 14October, 2019
  • 11September, 2017
  • 10November, 2020
  • 8January, 2021
  • 7August, 2020
  • 7November, 2018
  • 6July, 2019
  • 5March, 2019
  • 5October, 2017
  • 4August, 2021
  • 4June, 2019
  • 3August, 2018
  • 3October, 2022
  • 2May, 2019
  • 1August, 2022
  • 1February, 2020
  • 1June, 2018
Available data
  • 619bam
  • 550bigWig
  • 419fastq
  • 417tsv
  • 146bed narrowPeak
  • 80zippedFastqFolder
  • 61bigBed narrowPeak
  • 23bed bed3+
  • 13bed broadPeak
  • 11tagAlign
  • 7bedpe bed3+
  • 7bigBed broadPeak
  • 7hic
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 864Homo sapiens
Biosample type
  • 464tissue
  • 319primary cell
  • 82cell line
  • 3in vitro differentiated cells
Organ
  • 868pancreas
  • 749liver
  • 640connective tissue
  • 480epithelium
  • 471adipose tissue
  • 339kidney
  • 336heart
  • 216brain
  • 191vasculature
  • 185blood vessel
  • 159bone element
  • 127artery
  • 88limb
  • 77musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 33embryo
  • 27nerve
  • 21spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 13vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 682AMP
  • 152HPAP
  • 34T1D
Genome assembly (visualization)
  • 585hg19
  • 566GRCh38
Lab
  • 647AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
  • 51Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 75inconsistent ontology term
  • 4audit script error
Audit category:
  • 32missing controlled_by
Audit category:
  • 6inconsistent control read length
  • 1inconsistent assembly
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

868 results

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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
DNase-seq
Capture-C
FAIRE-seq
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans27858366743111
body of pancreas3424242
pancreas282412111
endocrine pancreas8
primary cell
pancreatic alpha cell52351012311
pancreatic beta cell21231012161
pancreatic acinar cell494121
pancreatic ductal cell44710
pancreatic endocrine cell12
cell line
EndoC_BH1331996121
Panc1911
in vitro differentiated cells
pancreatic PP cell3
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