Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 397total RNA-seq
  • 152ATAC-seq
  • 80single cell RNA-seq
  • 67ChIP-seq
  • 51WGBS
  • 11snATAC-seq
  • 10MeRIP-seq
  • 9Hi-C
  • 8DNase-seq
  • 2Capture-C
  • 2FAIRE-seq
  • 2RRBS
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1pCHi-C
Assay category
  • 479Transcription
  • 173DNA accessibility
  • 67DNA binding
  • 53DNA methylation
  • 93D chromatin structure
Target of assay
  • 151histone
  • histone modification
  • 78broad histone mark
  • 73narrow histone mark
  • 53control
  • 19transcription factor
  • 9RNA binding protein
  • 5nucleotide modification
Date released
  • 157July, 2018
  • 122August, 2017
  • 104May, 2022
  • 59May, 2021
  • 56February, 2023
  • 45November, 2019
  • 40September, 2018
  • 39April, 2018
  • 32February, 2021
  • 23October, 2018
  • 19September, 2020
  • 11March, 2020
  • 11October, 2019
  • 11September, 2017
  • 10November, 2020
  • 8January, 2021
  • 7August, 2020
  • 7November, 2018
  • 6July, 2019
  • 5March, 2019
  • 5October, 2017
  • 4August, 2021
  • 4June, 2019
  • 3August, 2018
  • 3October, 2022
  • 1August, 2022
  • 1February, 2020
  • 1June, 2018
  • 1May, 2019
Available data
  • 552bam
  • 481bigWig
  • 417tsv
  • 371fastq
  • 87bed narrowPeak
  • 80zippedFastqFolder
  • 42bigBed narrowPeak
  • 17bed bed3+
  • 9bed broadPeak
  • 7bedpe bed3+
  • 7bigBed broadPeak
  • 7hic
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 4tagAlign
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 793Homo sapiens
Biosample type
  • 432tissue
  • 288primary cell
  • 73cell line
  • 2in vitro differentiated cells
Organ
  • 795pancreas
  • 688liver
  • 606connective tissue
  • 459adipose tissue
  • 431epithelium
  • 324kidney
  • 296heart
  • 165vasculature
  • 160blood vessel
  • 159bone element
  • 121artery
  • 99brain
  • 73limb
  • 68blood
  • 68bodily fluid
  • 63musculature of body
  • 58eye
  • 25embryo
  • 20lung
  • 19nerve
  • 19spleen
  • 18ureter
  • 16skeleton
  • 7vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 613AMP
  • 152HPAP
  • 30T1D
Genome assembly (visualization)
  • 516hg19
  • 499GRCh38
Lab
  • 574AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
  • 51Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 69inconsistent ontology term
  • 4audit script error
Audit category:
  • 6missing controlled_by
Audit category:
  • 1inconsistent assembly
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

795 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
DNase-seq
Capture-C
FAIRE-seq
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans27858620743111
body of pancreas3418242
pancreas242412111
endocrine pancreas2
primary cell
pancreatic alpha cell5235126311
pancreatic beta cell2123126161
pancreatic acinar cell49121
pancreatic ductal cell4410
pancreatic delta cell11
cell line
EndoC_BH1331936121
Panc1611
in vitro differentiated cells
pancreatic PP cell2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego