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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
46
ATAC-seq
34
ChIP-seq
6
single cell RNA-seq
4
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
65
Transcription
50
DNA accessibility
34
DNA binding
2
DNA methylation
1
3D chromatin structure
Target of assay
36
histone
36
histone modification
broad histone mark
14
narrow histone mark
13
control
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
35
February, 2023
28
May, 2019
8
July, 2019
6
August, 2021
4
June, 2019
3
March, 2020
2
February, 2020
1
October, 2019
Available data
107
bam
85
bigWig
70
bed narrowPeak
66
tsv
21
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
153
Homo sapiens
Biosample type
85
tissue
66
cell line
2
primary cell
Organ
868
pancreas
749
liver
640
connective tissue
epithelium
471
adipose tissue
339
kidney
336
heart
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
153
AMP
Genome assembly (visualization)
128
GRCh38
93
hg19
Lab
153
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
limb
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
153 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
1
36
5
2
aorta
1
6
4
2
1
1
thoracic aorta
2
1
9
ascending aorta
2
8
1
pulmonary artery
2
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
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