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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
2
ChIP-seq
2
DNase-seq
2
pCHi-C
1
RRBS
Assay category
2
DNA accessibility
2
DNA binding
1
DNA methylation
Target of assay
1
RNA binding protein
1
control
histone
1
histone modification
1
narrow histone mark
1
transcription factor
Date released
2
June, 2019
2
November, 2017
1
July, 2019
1
March, 2020
1
May, 2021
Available data
4
bam
4
bigWig
3
bed broadPeak
3
bed narrowPeak
3
bigBed broadPeak
3
bigBed narrowPeak
2
bed bed3+
2
fastq
1
bed bedMethyl
1
bigBed bedMethyl
1
tsv
Organism
7
Homo sapiens
Biosample type
5
primary cell
2
tissue
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
6
AMP
1
T1D
Genome assembly (visualization)
5
hg19
3
GRCh38
Lab
6
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
organ_slims!
blood vessel
target.investigated_as!
histone
BIOSAMPLE
ASSAY
7 results
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ChIP-seq
DNase-seq
pCHi-C
RRBS
primary cell
choroid plexus epithelial cell
2
1
1
smooth muscle cell of the brain vasculature
1
tissue
thymus
2
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