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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 79ChIP-seq
  • 60total RNA-seq
  • 46ATAC-seq
  • 6DNase-seq
  • 6single cell RNA-seq
  • 2WGBS
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 79DNA binding
  • 66Transcription
  • 52DNA accessibility
  • 2DNA methylation
  • 13D chromatin structure
Target of assay
  • 54histone
  • 54histone modification
  • 36broad histone mark
  • 18control
  • 18narrow histone mark
  • 7transcription factor
  • 3RNA binding protein
Date released
  • 66February, 2021
  • 50May, 2019
  • 35February, 2023
  • 26October, 2019
  • 8July, 2019
  • 6August, 2021
  • 4June, 2019
  • 3February, 2020
  • 3March, 2020
Available data
  • 155bam
  • 128bigWig
  • 113bed narrowPeak
  • 67tsv
  • 63bigBed narrowPeak
  • 6bed bed3+
  • 6bed broadPeak
  • 6bigBed broadPeak
  • 6tagAlign
  • 1bed bedMethyl
  • 1bedpe bed3+
  • 1bigBed bedMethyl
  • 1hic
Organism
  • 201Homo sapiens
Biosample type
  • 133tissue
  • 66cell line
  • 2primary cell
Organ
  • 946pancreas
  • 791liver
  • 684connective tissue
  • epithelium
  • 491adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 97musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 201AMP
Genome assembly (visualization)
  • 171GRCh38
  • 136hg19
Lab
  • 201AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

201 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery51362
tibial artery23112
aorta1314211
ascending aorta1621
thoracic aorta1621
cell line
smooth muscle cell of the coronary artery6528
primary cell
smooth muscle cell of the brain vasculature1
smooth muscle cell of the coronary artery1
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