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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 91ChIP-seq
  • 9DNase-seq
  • 6single cell RNA-seq
  • 6total RNA-seq
  • 5Hi-C
  • 2ATAC-seq
  • 2WGBS
  • 1FAIRE-seq
  • 1RRBS
  • 1pCHi-C
Assay category
  • 91DNA binding
  • 12DNA accessibility
  • 12Transcription
  • 53D chromatin structure
  • 3DNA methylation
Target of assay
  • 69histone
  • 69histone modification
  • 45broad histone mark
  • 24narrow histone mark
  • 18control
  • 4RNA binding protein
  • 4transcription factor
Date released
  • 47October, 2019
  • 45May, 2019
  • 9July, 2019
  • 6August, 2021
  • 6November, 2017
  • 5June, 2019
  • 4March, 2020
  • 2February, 2020
Available data
  • 109bam
  • 91bigWig
  • 80bed narrowPeak
  • 78bigBed narrowPeak
  • 15bed broadPeak
  • 15bigBed broadPeak
  • 13tsv
  • 11bed bed3+
  • 6fastq
  • 3hic
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hdf5
  • 1tar
Organism
  • 124Homo sapiens
Biosample type
  • 89tissue
  • 35primary cell
Organ
  • 946pancreas
  • 791liver
  • 684connective tissue
  • 524epithelium
  • 491adipose tissue
  • heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 97musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 124AMP
Genome assembly (visualization)
  • 93hg19
  • 84GRCh38
Lab
  • 124AMP-T2D consortium
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
organ_slims!
  • heart
BIOSAMPLE
ASSAY

124 results

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Clear Filters
ChIP-seq
DNase-seq
single cell RNA-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
RRBS
pCHi-C
tissue
tibial artery23211
aorta1341121
ascending aorta1612
thoracic aorta1621
pulmonary artery2
primary cell
endothelial cell of umbilical vein17221
brain microvascular endothelial cell311
choroid plexus epithelial cell311
endothelial cell of hepatic sinusoid1
kidney capillary endothelial cell1
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