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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 102ChIP-seq
  • 46ATAC-seq
  • 11DNase-seq
  • 5Hi-C
  • 2WGBS
  • 2total RNA-seq
  • 1FAIRE-seq
  • 1RRBS
  • 1pCHi-C
Assay category
  • 102DNA binding
  • 58DNA accessibility
  • 53D chromatin structure
  • 3DNA methylation
  • 2Transcription
Target of assay
  • 71histone
  • 71histone modification
  • 45broad histone mark
  • 26narrow histone mark
  • 22control
  • 9transcription factor
  • 5RNA binding protein
Date released
  • 50May, 2019
  • 47October, 2019
  • 35February, 2023
  • 14February, 2021
  • 9July, 2019
  • 7June, 2019
  • 6November, 2017
  • 3March, 2020
Available data
  • 133bed narrowPeak
  • 129bam
  • 99bigWig
  • 83bigBed narrowPeak
  • 17bed broadPeak
  • 17bigBed broadPeak
  • 13bed bed3+
  • 6fastq
  • 6tagAlign
  • 3hic
  • 3tsv
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hdf5
  • 1tar
Organism
  • 171Homo sapiens
Biosample type
  • 120tissue
  • 37primary cell
  • 14cell line
Organ
  • 601liver
  • 457pancreas
  • 321epithelium
  • 265brain
  • 231heart
  • 226kidney
  • 209connective tissue
  • 171vasculature
  • 165blood vessel
  • 119limb
  • 91adipose tissue
  • 88musculature of body
  • 85artery
  • 69blood
  • 69bodily fluid
  • 42eye
  • 42nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 13bone element
  • 12skeleton
  • 11lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 171AMP
Genome assembly (visualization)
  • 135GRCh38
  • 109hg19
Lab
  • 171AMP-T2D consortium
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

171 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
total RNA-seq
FAIRE-seq
RRBS
pCHi-C
tissue
coronary artery5362
tibial artery2312
aorta13121
ascending aorta161
thoracic aorta161
primary cell
endothelial cell of umbilical vein17221
brain microvascular endothelial cell311
choroid plexus epithelial cell311
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
cell line
smooth muscle cell of the coronary artery68
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