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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 102ChIP-seq
  • 56total RNA-seq
  • 46ATAC-seq
  • 11DNase-seq
  • 6single cell RNA-seq
  • 4Hi-C
  • 2WGBS
  • 1FAIRE-seq
  • 1RRBS
Assay category
  • 102DNA binding
  • 62Transcription
  • 58DNA accessibility
  • 43D chromatin structure
  • 3DNA methylation
Target of assay
  • 71histone
  • 71histone modification
  • 45broad histone mark
  • 26narrow histone mark
  • 22control
  • 9transcription factor
  • 5RNA binding protein
Date released
  • 66February, 2021
  • 50May, 2019
  • 47October, 2019
  • 35February, 2023
  • 10July, 2019
  • 7June, 2019
  • 6August, 2021
  • 6November, 2017
  • 2March, 2020
Available data
  • 183bam
  • 153bigWig
  • 133bed narrowPeak
  • 83bigBed narrowPeak
  • 62tsv
  • 17bed broadPeak
  • 17bigBed broadPeak
  • 13bed bed3+
  • 6fastq
  • 6tagAlign
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 2hdf5
  • 2hic
  • 1bedpe bed3+
  • 1tar
Organism
  • 229Homo sapiens
Biosample type
  • 129tissue
  • 66cell line
  • 34primary cell
Organ
  • 808pancreas
  • 775liver
  • 627connective tissue
  • 474adipose tissue
  • 443epithelium
  • 368heart
  • 335kidney
  • 229vasculature
  • 223blood vessel
  • 215brain
  • 151bone element
  • 137artery
  • 119limb
  • 87musculature of body
  • 67blood
  • 67bodily fluid
  • 58eye
  • 42nerve
  • 35embryo
  • 24spleen
  • 21vein
  • 19lung
  • 18ureter
  • 8skeleton
  • 4gonad
  • 4ovary
  • 1bone marrow
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1thymus
Project
  • 229AMP
Genome assembly (visualization)
  • 189GRCh38
  • 162hg19
Lab
  • 229AMP-T2D consortium
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

229 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
RRBS
tissue
coronary artery5362
tibial artery2312
aorta131412
thoracic aorta1621
ascending aorta1611
cell line
smooth muscle cell of the coronary artery6528
primary cell
endothelial cell of umbilical vein17211
brain microvascular endothelial cell311
choroid plexus epithelial cell311
endothelial cell of hepatic sinusoid1
kidney capillary endothelial cell1
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