Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 68ChIP-seq
  • 61total RNA-seq
  • 46ATAC-seq
  • 7DNase-seq
  • 6single cell RNA-seq
  • 3Hi-C
  • 2WGBS
  • 1pCHi-C
Assay category
  • 68DNA binding
  • 67Transcription
  • 53DNA accessibility
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 44histone
  • 44histone modification
  • 31broad histone mark
  • 19control
  • 13narrow histone mark
  • 5transcription factor
  • 3RNA binding protein
Date released
  • 64February, 2021
  • 42May, 2019
  • 35February, 2023
  • 25October, 2019
  • 9July, 2019
  • 6August, 2021
  • 4June, 2019
  • 4March, 2020
  • 3February, 2020
  • 2November, 2017
Available data
  • 146bam
  • 120bigWig
  • 102bed narrowPeak
  • 68tsv
  • 54bigBed narrowPeak
  • 7bed bed3+
  • 7bed broadPeak
  • 7bigBed broadPeak
  • 4tagAlign
  • 3hic
  • 2bedpe bed3+
  • 2fastq
  • 1bed bedMethyl
  • 1bigBed bedMethyl
Organism
  • 194Homo sapiens
Biosample type
  • 121tissue
  • 64cell line
  • 9primary cell
Organ
  • 883pancreas
  • 673connective tissue
  • 491adipose tissue
  • 436epithelium
  • 381liver
  • 377heart
  • 315kidney
  • 261brain
  • 194vasculature
  • 193blood vessel
  • 158bone element
  • 134artery
  • 117limb
  • 83musculature of body
  • 57eye
  • 43nerve
  • 26embryo
  • 25spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 13blood
  • 13bodily fluid
  • 5gonad
  • 5ovary
  • 4vein
  • 2intestine
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 194AMP
Genome assembly (visualization)
  • 161GRCh38
  • 129hg19
Lab
  • 194AMP-T2D consortium
Audit category:
  • 1audit script error
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

194 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
pCHi-C
tissue
coronary artery41362
tibial artery19112
aorta1314121
ascending aorta1621
thoracic aorta921
cell line
smooth muscle cell of the coronary artery4528
primary cell
endothelial cell of umbilical vein112
brain microvascular endothelial cell1
choroid plexus epithelial cell1
endothelial cell of coronary artery1
kidney capillary endothelial cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego