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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 34ChIP-seq
  • 5total RNA-seq
  • 4DNase-seq
  • 3Hi-C
  • 1FAIRE-seq
  • 1RRBS
  • 1pCHi-C
Assay category
  • 34DNA binding
  • 5DNA accessibility
  • 5Transcription
  • 33D chromatin structure
  • 1DNA methylation
Target of assay
  • 27histone
  • 27histone modification
  • 14broad histone mark
  • 13narrow histone mark
  • 4transcription factor
  • 3control
  • 2RNA binding protein
Date released
  • 22October, 2019
  • 8May, 2019
  • 5July, 2019
  • 4November, 2017
  • 3February, 2020
  • 3June, 2019
  • 2February, 2021
  • 2March, 2020
Available data
  • 41bam
  • 37bigWig
  • 31bed narrowPeak
  • 29bigBed narrowPeak
  • 10bed broadPeak
  • 10bigBed broadPeak
  • 6bed bed3+
  • 6tsv
  • 4fastq
  • 2hdf5
  • 2tagAlign
  • 1bed bedMethyl
  • 1bedpe bed3+
  • 1bigBed bedMethyl
  • 1hic
  • 1tar
Organism
  • 49Homo sapiens
Biosample type
  • 31primary cell
  • 16tissue
  • 2cell line
Organ
  • 426liver
  • 201pancreas
  • 169epithelium
  • 96brain
  • 68connective tissue
  • 58blood
  • 58bodily fluid
  • 58kidney
  • 49vasculature
  • 44blood vessel
  • 41heart
  • 22musculature of body
  • 19vein
  • 17adipose tissue
  • 13embryo
  • 11artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 49AMP
Genome assembly (visualization)
  • 39hg19
  • 32GRCh38
Lab
  • 49AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

49 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
Hi-C
FAIRE-seq
RRBS
pCHi-C
primary cell
endothelial cell of umbilical vein16111
brain microvascular endothelial cell211
choroid plexus epithelial cell211
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
tissue
thoracic aorta7
tibial artery41
coronary artery11
aorta1
ascending aorta1
cell line
smooth muscle cell of the coronary artery2
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