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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 34ChIP-seq
  • 4DNase-seq
  • 2Hi-C
  • 1FAIRE-seq
  • 1RRBS
Assay category
  • 34DNA binding
  • 5DNA accessibility
  • 23D chromatin structure
  • 1DNA methylation
Target of assay
  • 27histone
  • 27histone modification
  • 14broad histone mark
  • 13narrow histone mark
  • 4transcription factor
  • 3control
  • 2RNA binding protein
Date released
  • 22October, 2019
  • 8May, 2019
  • 4November, 2017
  • 3July, 2019
  • 3June, 2019
  • 2February, 2021
Available data
  • 39bam
  • 35bigWig
  • 31bed narrowPeak
  • 29bigBed narrowPeak
  • 10bed broadPeak
  • 10bigBed broadPeak
  • 6bed bed3+
  • 4fastq
  • 2hdf5
  • 2tagAlign
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1tar
Organism
  • 42Homo sapiens
Biosample type
  • 28primary cell
  • 12tissue
  • 2cell line
Organ
  • 410liver
  • 88epithelium
  • 63pancreas
  • 56blood
  • 56bodily fluid
  • 42vasculature
  • 39kidney
  • 37blood vessel
  • 25brain
  • 18vein
  • 16heart
  • 13musculature of body
  • 11connective tissue
  • 11embryo
  • 7artery
  • 5limb
  • 4eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 42AMP
Genome assembly (visualization)
  • 36hg19
  • 30GRCh38
Lab
  • 42AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
BIOSAMPLE
ASSAY

42 results

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Clear Filters
ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein1611
brain microvascular endothelial cell211
choroid plexus epithelial cell211
endothelial cell of hepatic sinusoid1
smooth muscle cell of the brain vasculature1
tissue
thoracic aorta7
tibial artery4
coronary artery1
cell line
smooth muscle cell of the coronary artery2
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