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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 68ChIP-seq
  • 56total RNA-seq
  • 46ATAC-seq
  • 7DNase-seq
  • 6single cell RNA-seq
  • 2Hi-C
  • 2WGBS
Assay category
  • 68DNA binding
  • 62Transcription
  • 53DNA accessibility
  • 23D chromatin structure
  • 2DNA methylation
Target of assay
  • 44histone
  • 44histone modification
  • 31broad histone mark
  • 19control
  • 13narrow histone mark
  • 5transcription factor
  • 3RNA binding protein
Date released
  • 64February, 2021
  • 42May, 2019
  • 35February, 2023
  • 25October, 2019
  • 7July, 2019
  • 6August, 2021
  • 4June, 2019
  • 2March, 2020
  • 2November, 2017
Available data
  • 144bam
  • 118bigWig
  • 102bed narrowPeak
  • 62tsv
  • 54bigBed narrowPeak
  • 7bed bed3+
  • 7bed broadPeak
  • 7bigBed broadPeak
  • 4tagAlign
  • 2fastq
  • 2hic
  • 1bed bedMethyl
  • 1bedpe bed3+
  • 1bigBed bedMethyl
Organism
  • 187Homo sapiens
Biosample type
  • 117tissue
  • 64cell line
  • 6primary cell
Organ
  • 745pancreas
  • 616connective tissue
  • 474adipose tissue
  • 365liver
  • 355epithelium
  • 352heart
  • 296kidney
  • 190brain
  • 187vasculature
  • 186blood vessel
  • 150bone element
  • 130artery
  • 114limb
  • 74musculature of body
  • 54eye
  • 42nerve
  • 24embryo
  • 24spleen
  • 19lung
  • 18ureter
  • 11blood
  • 11bodily fluid
  • 8skeleton
  • 4gonad
  • 4ovary
  • 3vein
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 187AMP
Genome assembly (visualization)
  • 159GRCh38
  • 126hg19
Lab
  • 187AMP-T2D consortium
Audit category:
  • 1audit script error
BIOSAMPLE
ASSAY

187 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
tissue
coronary artery4362
tibial artery1912
aorta131412
ascending aorta1611
thoracic aorta921
cell line
smooth muscle cell of the coronary artery4528
primary cell
endothelial cell of umbilical vein111
brain microvascular endothelial cell1
choroid plexus epithelial cell1
kidney capillary endothelial cell1
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