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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 61total RNA-seq
  • 57ChIP-seq
  • 46ATAC-seq
  • 11DNase-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 2WGBS
  • 1FAIRE-seq
  • 1RRBS
  • 1pCHi-C
Assay category
  • 67Transcription
  • 58DNA accessibility
  • 57DNA binding
  • 53D chromatin structure
  • 3DNA methylation
Target of assay
  • 71histone
  • 71histone modification
  • broad histone mark
  • 26narrow histone mark
  • 22control
  • 9transcription factor
  • 5RNA binding protein
Date released
  • 66February, 2021
  • 35February, 2023
  • 28May, 2019
  • 24October, 2019
  • 12July, 2019
  • 7June, 2019
  • 6August, 2021
  • 6November, 2017
  • 4March, 2020
  • 3February, 2020
Available data
  • 140bam
  • 112bigWig
  • 92bed narrowPeak
  • 68tsv
  • 42bigBed narrowPeak
  • 15bed broadPeak
  • 15bigBed broadPeak
  • 13bed bed3+
  • 6fastq
  • 6tagAlign
  • 3hic
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hdf5
  • 1tar
Organism
  • 191Homo sapiens
Biosample type
  • 97tissue
  • 66cell line
  • 28primary cell
Organ
  • 868pancreas
  • 749liver
  • 640connective tissue
  • 480epithelium
  • 471adipose tissue
  • 339kidney
  • 336heart
  • 216brain
  • 191vasculature
  • 185blood vessel
  • 159bone element
  • 127artery
  • 88limb
  • 77musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 33embryo
  • 27nerve
  • 21spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 13vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 191AMP
Genome assembly (visualization)
  • 150GRCh38
  • 122hg19
Lab
  • 191AMP-T2D consortium
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

191 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
RRBS
pCHi-C
tissue
coronary artery15362
aorta164121
tibial artery1912
thoracic aorta291
ascending aorta281
cell line
smooth muscle cell of the coronary artery5268
primary cell
endothelial cell of umbilical vein8221
brain microvascular endothelial cell311
choroid plexus epithelial cell311
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
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