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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 80ChIP-seq
  • 61total RNA-seq
  • 46ATAC-seq
  • 11DNase-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 2WGBS
  • 1FAIRE-seq
  • 1RRBS
  • 1pCHi-C
Assay category
  • 80DNA binding
  • 67Transcription
  • 58DNA accessibility
  • 53D chromatin structure
  • 3DNA methylation
Target of assay
  • 71histone
  • 71histone modification
  • 45broad histone mark
  • 26narrow histone mark
  • control
  • 9transcription factor
  • 5RNA binding protein
Date released
  • 64February, 2021
  • 40October, 2019
  • 39May, 2019
  • 35February, 2023
  • 12July, 2019
  • 7June, 2019
  • 6August, 2021
  • 4March, 2020
  • 4November, 2017
  • 3February, 2020
Available data
  • 163bam
  • 153bigWig
  • 133bed narrowPeak
  • 83bigBed narrowPeak
  • 68tsv
  • 17bed broadPeak
  • 17bigBed broadPeak
  • 13bed bed3+
  • 4fastq
  • 4tagAlign
  • 3hic
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hdf5
  • 1tar
Organism
  • 214Homo sapiens
Biosample type
  • 117tissue
  • 64cell line
  • 33primary cell
Organ
  • 893pancreas
  • 683liver
  • 649connective tissue
  • 494epithelium
  • 467adipose tissue
  • 373heart
  • 342kidney
  • 255brain
  • 214vasculature
  • 209blood vessel
  • 159bone element
  • 132artery
  • 105limb
  • 90musculature of body
  • 63blood
  • 63bodily fluid
  • 60eye
  • 32nerve
  • 30embryo
  • 20lung
  • 20vein
  • 18ureter
  • 17spleen
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 214AMP
Genome assembly (visualization)
  • 191GRCh38
  • 163hg19
Lab
  • 214AMP-T2D consortium
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
target.investigated_as!
  • control
BIOSAMPLE
ASSAY

214 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
RRBS
pCHi-C
tissue
coronary artery31362
tibial artery18112
aorta1114121
ascending aorta1321
thoracic aorta1221
cell line
smooth muscle cell of the coronary artery4528
primary cell
endothelial cell of umbilical vein15221
brain microvascular endothelial cell211
choroid plexus epithelial cell211
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
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