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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 61total RNA-seq
  • 46ATAC-seq
  • 31ChIP-seq
  • 11DNase-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 2WGBS
  • 1FAIRE-seq
  • 1RRBS
  • 1pCHi-C
Assay category
  • 67Transcription
  • 58DNA accessibility
  • 31DNA binding
  • 53D chromatin structure
  • 3DNA methylation
Target of assay
  • 71histone
  • histone modification
  • 45broad histone mark
  • 26narrow histone mark
  • 22control
  • 9transcription factor
  • 5RNA binding protein
Date released
  • 66February, 2021
  • 35February, 2023
  • 14May, 2019
  • 14October, 2019
  • 12July, 2019
  • 7June, 2019
  • 6August, 2021
  • 4March, 2020
  • 4November, 2017
  • 3February, 2020
Available data
  • 114bam
  • 87bigWig
  • 68tsv
  • 67bed narrowPeak
  • 17bigBed narrowPeak
  • 13bed bed3+
  • 13bed broadPeak
  • 13bigBed broadPeak
  • 6tagAlign
  • 4fastq
  • 3hic
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hdf5
  • 1tar
Organism
  • 165Homo sapiens
Biosample type
  • 79tissue
  • 66cell line
  • 20primary cell
Organ
  • 795pancreas
  • 688liver
  • 606connective tissue
  • 459adipose tissue
  • 431epithelium
  • 324kidney
  • 296heart
  • 165vasculature
  • 160blood vessel
  • 159bone element
  • 121artery
  • 99brain
  • 73limb
  • 68blood
  • 68bodily fluid
  • 63musculature of body
  • 58eye
  • 25embryo
  • 20lung
  • 19nerve
  • 19spleen
  • 18ureter
  • 16skeleton
  • 7vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 165AMP
Genome assembly (visualization)
  • 125GRCh38
  • 97hg19
Lab
  • 165AMP-T2D consortium
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

165 results

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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
RRBS
pCHi-C
tissue
coronary artery13632
aorta124121
tibial artery1152
thoracic aorta215
ascending aorta241
cell line
smooth muscle cell of the coronary artery5286
primary cell
endothelial cell of umbilical vein2221
brain microvascular endothelial cell211
choroid plexus epithelial cell211
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
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