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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 76ChIP-seq
  • 61total RNA-seq
  • 46ATAC-seq
  • 11DNase-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 2WGBS
  • 1FAIRE-seq
  • 1RRBS
  • 1pCHi-C
Assay category
  • 76DNA binding
  • 67Transcription
  • 58DNA accessibility
  • 53D chromatin structure
  • 3DNA methylation
Target of assay
  • 71histone
  • 71histone modification
  • 45broad histone mark
  • narrow histone mark
  • 22control
  • 9transcription factor
  • 5RNA binding protein
Date released
  • 66February, 2021
  • 37October, 2019
  • 36May, 2019
  • 35February, 2023
  • 12July, 2019
  • 7June, 2019
  • 6August, 2021
  • 4March, 2020
  • 4November, 2017
  • 3February, 2020
Available data
  • 159bam
  • 130bigWig
  • 108bed narrowPeak
  • 68tsv
  • 58bigBed narrowPeak
  • 15bed broadPeak
  • 15bigBed broadPeak
  • 13bed bed3+
  • 6tagAlign
  • 4fastq
  • 3hic
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hdf5
  • 1tar
Organism
  • 210Homo sapiens
Biosample type
  • 115tissue
  • 66cell line
  • 29primary cell
Organ
  • 873pancreas
  • 731liver
  • 651connective tissue
  • 479adipose tissue
  • 475epithelium
  • 353heart
  • 339kidney
  • 210vasculature
  • 205blood vessel
  • 169brain
  • 159bone element
  • 135artery
  • 107limb
  • 84musculature of body
  • 68blood
  • 68bodily fluid
  • 58eye
  • 35nerve
  • 29embryo
  • 23spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 16vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 210AMP
Genome assembly (visualization)
  • 166GRCh38
  • 140hg19
Lab
  • 210AMP-T2D consortium
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
target.investigated_as!
  • narrow histone mark
BIOSAMPLE
ASSAY

210 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
RRBS
pCHi-C
tissue
coronary artery31362
tibial artery19112
aorta914121
ascending aorta1221
thoracic aorta1221
cell line
smooth muscle cell of the coronary artery6528
primary cell
endothelial cell of umbilical vein11221
brain microvascular endothelial cell211
choroid plexus epithelial cell211
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
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