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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 93ChIP-seq
  • 61total RNA-seq
  • 46ATAC-seq
  • 11DNase-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 2WGBS
  • 1FAIRE-seq
  • 1RRBS
  • 1pCHi-C
Assay category
  • 93DNA binding
  • 67Transcription
  • 58DNA accessibility
  • 53D chromatin structure
  • 3DNA methylation
Target of assay
  • 71histone
  • 71histone modification
  • 45broad histone mark
  • 26narrow histone mark
  • 22control
  • transcription factor
  • 5RNA binding protein
Date released
  • 62February, 2021
  • 47May, 2019
  • 47October, 2019
  • 35February, 2023
  • 12July, 2019
  • 7June, 2019
  • 6August, 2021
  • 4March, 2020
  • 4November, 2017
  • 3February, 2020
Available data
  • 176bam
  • 146bigWig
  • 124bed narrowPeak
  • 78bigBed narrowPeak
  • 68tsv
  • 15bed broadPeak
  • 15bigBed broadPeak
  • 13bed bed3+
  • 4fastq
  • 3hic
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hdf5
  • 2tagAlign
  • 1tar
Organism
  • 227Homo sapiens
Biosample type
  • 130tissue
  • 62cell line
  • 35primary cell
Organ
  • 927pancreas
  • 644connective tissue
  • 515epithelium
  • 474adipose tissue
  • 453liver
  • 376heart
  • 344kidney
  • 283brain
  • 227vasculature
  • 222blood vessel
  • 159bone element
  • 136artery
  • 122limb
  • 96musculature of body
  • 60eye
  • 43nerve
  • 34embryo
  • 22vein
  • 20lung
  • 19spleen
  • 18blood
  • 18bodily fluid
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 227AMP
Genome assembly (visualization)
  • 182GRCh38
  • 156hg19
Lab
  • 227AMP-T2D consortium
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

227 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
RRBS
pCHi-C
tissue
coronary artery41362
tibial artery23112
aorta1314121
ascending aorta1521
thoracic aorta1521
cell line
smooth muscle cell of the coronary artery2528
primary cell
endothelial cell of umbilical vein17221
brain microvascular endothelial cell211
choroid plexus epithelial cell211
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
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