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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1286total RNA-seq
  • 1109ChIP-seq
  • 336ATAC-seq
  • 274single cell RNA-seq
  • 163DNase-seq
  • 86RNA microarray
  • 71snATAC-seq
  • 67WGBS
  • 15Hi-C
  • 8pCHi-C
  • 7small RNA-seq
  • 5GRO-seq
  • 2Capture-C
  • 2HiChIP
  • 2RRBS
  • 1FAIRE-seq
  • 1STARR-seq
  • 1snDrop-seq
  • 1whole genome sequencing assay
Assay category
  • 1567Transcription
  • 1109DNA binding
  • 571DNA accessibility
  • 69DNA methylation
  • 153D chromatin structure
  • 1DNA sequencing
Target of assay
  • 750histone modification
  • 749histone
  • 389broad histone mark
  • 359narrow histone mark
  • 265control
  • 94transcription factor
  • 32RNA binding protein
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 1recombinant protein
Date released
  • 672February, 2021
  • 348August, 2017
  • 252August, 2021
  • 251May, 2021
  • 198May, 2022
  • 197May, 2020
  • 190October, 2019
  • 156June, 2019
  • 151February, 2023
  • 123July, 2018
  • 111November, 2017
  • 106May, 2019
  • 78April, 2019
  • 72September, 2018
  • 68October, 2018
  • 59September, 2020
  • 48July, 2019
  • 47September, 2023
  • 40May, 2024
  • 38February, 2018
  • 37November, 2019
  • 32December, 2017
  • 24November, 2018
  • 18April, 2020
  • 16March, 2020
  • 16October, 2017
  • 15May, 2023
  • 11January, 2021
  • 10April, 2018
  • 9January, 2019
  • 9September, 2017
  • 8January, 2018
  • 7August, 2020
  • 7December, 2018
  • 6November, 2020
  • 3December, 2019
  • 2June, 2018
  • 1August, 2018
  • 1August, 2022
Available data
  • 2226bam
  • 2085bigWig
  • 1229tsv
  • 1083bed narrowPeak
  • 721fastq
  • 507bigBed narrowPeak
  • 249tagAlign
  • 191bed broadPeak
  • 166bed bed3+
  • 162bigBed broadPeak
  • 153zippedFastqFolder
  • 152txt
  • 64xls
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1vcf
Organism
  • 3437Homo sapiens
Biosample type
  • 2415tissue
  • 612primary cell
  • 211in vitro differentiated cells
  • 195cell line
  • 4stem cell
Organ
  • 737pancreas
  • 615connective tissue
  • 473adipose tissue
  • 365liver
  • 354epithelium
  • 352heart
  • 296kidney
  • 190brain
  • 187vasculature
  • 186blood vessel
  • 150bone element
  • 130artery
  • 114limb
  • 74musculature of body
  • 54eye
  • 42nerve
  • 24embryo
  • 24spleen
  • 18lung
  • 18ureter
  • 11blood
  • 11bodily fluid
  • 8skeleton
  • 4gonad
  • 4ovary
  • 3vein
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 2974AMP
  • 315HPAP
  • 83T1D
  • 47KPMP
  • 18LungMap
Genome assembly (visualization)
  • 2117GRCh38
  • 2049hg19
  • 5hg18
Lab
  • 2641AMP-T2D consortium
  • 315Klaus Kaestner, Upenn
  • 170Kyle Gaulton, UCSD
  • 138Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 28Bing Ren, UCSD
  • 18Xin Sun, UCSD
Audit category:
  • 219inconsistent ontology term
  • 36audit script error
Audit category:
  • 63missing controlled_by
Audit category:
  • 18inconsistent control read length
BIOSAMPLE
ASSAY

3437 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
GRO-seq
Capture-C
HiChIP
RRBS
FAIRE-seq
STARR-seq
snDrop-seq
whole genome sequencing assay
tissue
adipose tissue382213
islet of Langerhans28249314141
liver164103201311
kidney492675641121
bone element84
primary cell
Langerhans cell8548
pancreatic alpha cell521335125
monocyte283813
pancreatic beta cell211223116
exocrine cell39
in vitro differentiated cells
adipocyte460
cardiomyocytes473
embryonic stem cell2291
pancreatic endoderm4151
definitive endodermal cell251
cell line
EndoC_BH1311317122
smooth muscle cell of the coronary artery5248
HepG294311
GM1287841
Panc12
stem cell
hESC1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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