Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1323total RNA-seq
  • 277single cell RNA-seq
  • 87RNA microarray
  • 7ChIP-seq
  • 7small RNA-seq
  • 6MeRIP-seq
  • 5STARR-seq
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snATAC-seq
  • 1snDrop-seq
Assay category
  • 1611Transcription
  • 7DNA binding
  • 1DNA accessibility
Target of assay
  • 6histone
  • 6histone modification
  • 4broad histone mark
  • 4control
  • 3nucleotide modification
  • 2narrow histone mark
Date released
  • 641February, 2021
  • 178August, 2021
  • 143May, 2020
  • 124July, 2018
  • 118May, 2021
  • 96August, 2017
  • 82February, 2023
  • 59May, 2022
  • 56September, 2020
  • 47September, 2023
  • 27July, 2019
  • 26September, 2018
  • 23October, 2019
  • 20November, 2019
  • 14February, 2018
  • 12March, 2020
  • 10April, 2018
  • 10April, 2020
  • 10December, 2019
  • 10November, 2020
  • 4March, 2023
  • 4May, 2023
  • 2June, 2018
  • 2October, 2018
  • 1November, 2018
  • 1October, 2022
Available data
  • 1266tsv
  • 1158bam
  • 1153bigWig
  • 287fastq
  • 153txt
  • 52zippedFastqFolder
  • 7tagAlign
  • 6bed broadPeak
  • 6bed narrowPeak
  • 6bigBed narrowPeak
  • 6csv
  • 2bed bed3+
Organism
  • 1705Homo sapiens
Biosample type
  • 1242tissue
  • 263primary cell
  • 123cell line
  • 90in vitro differentiated cells
  • 2stem cell
Organ
  • 460connective tissue
  • 411pancreas
  • 393adipose tissue
  • 186liver
  • 152heart
  • 142bone element
  • 140epithelium
  • 122kidney
  • 62blood vessel
  • 62vasculature
  • 54artery
  • 18eye
  • 12embryo
  • 10lung
  • 2musculature of body
  • 1brain
Project
  • 1452AMP
  • 177HPAP
  • 47KPMP
  • 30T1D
  • 10LungMap
  • 4community
Genome assembly (visualization)
  • 1154hg19
  • 1152GRCh38
Lab
  • 1345AMP-T2D consortium
  • 177Klaus Kaestner, Upenn
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 37Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 10Xin Sun, UCSD
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
Audit category:
  • 202inconsistent ontology term
  • 9audit script error
Audit category:
  • 1inconsistent assembly
replicates.library.nucleic_acid_term_name!
  • DNA
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

1720 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
RNA microarray
ChIP-seq
small RNA-seq
MeRIP-seq
STARR-seq
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
MPRA
shRNA RNA-seq
siRNA RNA-seq
snATAC-seq
snDrop-seq
tissue
adipose tissue382
islet of Langerhans282
liver1651
kidney4964
bone element84
primary cell
Langerhans cell85
pancreatic alpha cell521
exocrine cell39
monocyte28
pancreatic beta cell211
cell line
smooth muscle cell of the coronary artery52
EndoC_BH13361
HepG292
H1-hESC8
EndoC-BH111
in vitro differentiated cells
cardiomyocytes47
cardiac precursors (cardiac muscle cell)19
adipocyte4
cardiomyocytes (cardiac muscle cell)22
pancreatic endoderm4
stem cell
SB Ad3.111
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego