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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1414total RNA-seq
  • 363single cell RNA-seq
  • 87RNA microarray
  • 18small RNA-seq
  • 7ChIP-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snATAC-seq
Assay category
  • 1799Transcription
  • 7DNA binding
  • 1DNA accessibility
Target of assay
  • 6histone
  • 6histone modification
  • 4broad histone mark
  • 3control
  • 2narrow histone mark
  • 2nucleotide modification
Date released
  • 631February, 2021
  • 182May, 2021
  • 174August, 2021
  • 167July, 2018
  • 145May, 2020
  • 96August, 2017
  • 95February, 2023
  • 60May, 2022
  • 56September, 2020
  • 49April, 2018
  • 49July, 2019
  • 47September, 2023
  • 27September, 2018
  • 25February, 2020
  • 20November, 2019
  • 17October, 2019
  • 15February, 2018
  • 10April, 2020
  • 10March, 2020
  • 8November, 2020
  • 4March, 2023
  • 4May, 2023
  • 3August, 2018
  • 3December, 2019
  • 3June, 2018
  • 2October, 2018
  • 1November, 2018
  • 1October, 2022
Available data
  • 1430tsv
  • 1296bam
  • 1291bigWig
  • 372fastq
  • 157txt
  • 52zippedFastqFolder
  • 8csv
  • 7tagAlign
  • 6bed broadPeak
  • 6bed narrowPeak
  • 6bigBed narrowPeak
  • 2bed bed3+
Organism
  • 1889Homo sapiens
Biosample type
  • 1322tissue
  • 368primary cell
  • 114in vitro differentiated cells
  • 98cell line
  • 2stem cell
Organ
  • 489pancreas
  • 476connective tissue
  • 401adipose tissue
  • 190epithelium
  • 182liver
  • 161heart
  • 146bone element
  • 122kidney
  • 65blood vessel
  • 65vasculature
  • 56artery
  • 20brain
  • 19eye
  • 10lung
  • 8musculature of body
  • 6embryo
  • 4skeleton
  • 3limb
  • 1nerve
  • 1spinal cord
Project
  • 1608AMP
  • 177HPAP
  • 58T1D
  • 47KPMP
  • 10LungMap
  • 4community
Genome assembly (visualization)
  • 1292hg19
  • 1290GRCh38
Lab
  • 1501AMP-T2D consortium
  • 177Klaus Kaestner, Upenn
  • 70Kyle Gaulton, UCSD
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 11Bing Ren, UCSD
  • 10Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
  • 4Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 191inconsistent ontology term
  • 7audit script error
Audit category:
  • 1inconsistent assembly
replicates.library.nucleic_acid_term_name!
  • DNA
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

1904 results

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Clear Filters
total RNA-seq
single cell RNA-seq
RNA microarray
small RNA-seq
ChIP-seq
MeRIP-seq
snDrop-seq
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
MPRA
STARR-seq
shRNA RNA-seq
siRNA RNA-seq
snATAC-seq
tissue
adipose tissue382
islet of Langerhans29264
liver16611
kidney4964
bone element84
primary cell
Langerhans cell85
pancreatic alpha cell5212
monocyte52
exocrine cell39
pancreatic beta cell2112
in vitro differentiated cells
cardiomyocytes59
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
adipocyte5
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1311
HepG29
EndoC-BH111
MIN61
stem cell
SB Ad3.111
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