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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 181total RNA-seq
  • 92single cell RNA-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 4STARR-seq
  • 2snDrop-seq
Assay category
  • 284Transcription
Target of assay
  • 5control
  • 5nucleotide modification
Date released
  • 64May, 2021
  • 45July, 2018
  • 39April, 2018
  • 26February, 2021
  • 25February, 2020
  • 22July, 2019
  • 20August, 2021
  • 13February, 2023
  • 12October, 2019
  • 10November, 2020
  • 8March, 2020
  • 7December, 2019
  • 3August, 2018
  • 2May, 2020
  • 1February, 2018
  • 1June, 2018
  • 1May, 2022
  • 1September, 2018
Available data
  • 260tsv
  • 230bam
  • 230bigWig
  • 87fastq
  • 4txt
  • 2csv
Organism
  • 300Homo sapiens
Biosample type
  • 117primary cell
  • 86tissue
  • 72in vitro differentiated cells
  • 25cell line
Organ
  • 94pancreas
  • 78epithelium
  • 21brain
  • 16connective tissue
  • 12kidney
  • 12liver
  • 11heart
  • 10embryo
  • 8adipose tissue
  • 6musculature of body
  • 4bone element
  • 4skeleton
  • 3blood vessel
  • 3limb
  • 3vasculature
  • 2artery
  • 1eye
  • 1nerve
  • 1spinal cord
Project
  • 268AMP
  • 32T1D
Genome assembly (visualization)
  • 230GRCh38
  • 230hg19
Lab
  • 252AMP-T2D consortium
  • 33Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 5Bing Ren, UCSD
Audit category:
  • 59inconsistent ontology term
  • 2audit script error
replicates.library.nucleic_acid_term_name!
  • DNA
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

300 results

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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
MeRIP-seq
STARR-seq
snDrop-seq
primary cell
monocyte24
pancreatic alpha cell11
pancreatic beta cell11
pancreatic delta cell10
pancreatic ductal cell9
tissue
islet of Langerhans1064
heart311
liver31
frontal cortex21
skeletal muscle tissue111
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)19
cardiomyocytes12
induced pluripotent stem cell9
neural progenitor cell7
cardiomyocytes (cardiac muscle cell)32
cell line
EndoC_BH126
H1-hESC8
HEK293T2
HepG22
RCC 7860 HIF1a re-expression1
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