Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 45total RNA-seq
  • 6MeRIP-seq
  • 4STARR-seq
  • 3single cell RNA-seq
Assay category
  • 48Transcription
Target of assay
  • 3control
  • 3nucleotide modification
Date released
  • 18February, 2021
  • 12August, 2021
  • 9October, 2019
  • 7December, 2019
  • 6November, 2020
  • 5March, 2020
  • 1July, 2018
Available data
  • 48tsv
  • 46bam
  • 46bigWig
  • 1fastq
Organism
  • 58Homo sapiens
Biosample type
  • 25cell line
  • 24in vitro differentiated cells
  • 6primary cell
  • 3tissue
Organ
  • 14epithelium
  • 8embryo
  • 8liver
  • 8pancreas
  • 6kidney
  • 1brain
  • 1heart
Project
  • 56AMP
  • 2T1D
Genome assembly (visualization)
  • 46GRCh38
  • 46hg19
Lab
  • 48AMP-T2D consortium
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
Audit category:
  • 35inconsistent ontology term
  • 2audit script error
replicates.library.nucleic_acid_term_name!
  • DNA
BIOSAMPLE
ASSAY

58 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
MeRIP-seq
STARR-seq
single cell RNA-seq
cell line
EndoC_BH126
H1-hESC8
HEK293T2
HepG22
RCC 7860 HIF1a re-expression1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)19
cardiomyocytes (cardiac muscle cell)22
lymphocyte of B lineage (iPSC)1
primary cell
hepatocyte5
pancreatic cell1
tissue
brain1
heart1
liver1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego