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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1278total RNA-seq
  • 274single cell RNA-seq
  • 87RNA microarray
  • 7ChIP-seq
  • 7small RNA-seq
  • 2snATAC-seq
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snDrop-seq
Assay category
  • 1563Transcription
  • 7DNA binding
  • 2DNA accessibility
Target of assay
  • 6histone
  • 6histone modification
  • 4broad histone mark
  • 2narrow histone mark
  • 1control
Date released
  • 623February, 2021
  • 166August, 2021
  • 143May, 2020
  • 123July, 2018
  • 118May, 2021
  • 96August, 2017
  • 82February, 2023
  • 59May, 2022
  • 56September, 2020
  • 47September, 2023
  • 27July, 2019
  • 26September, 2018
  • 20November, 2019
  • 14February, 2018
  • 14October, 2019
  • 10April, 2018
  • 10April, 2020
  • 7March, 2020
  • 4March, 2023
  • 4May, 2023
  • 4November, 2020
  • 3December, 2019
  • 2June, 2018
  • 2October, 2018
  • 1July, 2025
  • 1November, 2018
  • 1October, 2022
Available data
  • 1219tsv
  • 1112bam
  • 1107bigWig
  • 286fastq
  • 153txt
  • 52zippedFastqFolder
  • 7tagAlign
  • 6bed broadPeak
  • 6bed narrowPeak
  • 6bigBed narrowPeak
  • 6csv
  • 3bed bed3+
  • 1tbi
Organism
  • 1647Homo sapiens
Biosample type
  • 1240tissue
  • 257primary cell
  • 98cell line
  • 66in vitro differentiated cells
  • 2stem cell
Organ
  • 460connective tissue
  • 403pancreas
  • 393adipose tissue
  • 178liver
  • 151heart
  • 142bone element
  • 126epithelium
  • 116kidney
  • 62blood vessel
  • 62vasculature
  • 54artery
  • 18eye
  • 10lung
  • 4embryo
  • 3musculature of body
Project
  • 1397AMP
  • 177HPAP
  • 47KPMP
  • 28T1D
  • 10LungMap
  • 4community
Genome assembly (visualization)
  • 1108hg19
  • 1107GRCh38
Lab
  • 1297AMP-T2D consortium
  • 177Klaus Kaestner, Upenn
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 37Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 10Bing Ren, UCSD
  • 10Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 167inconsistent ontology term
  • 7audit script error
Audit category:
  • 1inconsistent assembly
replicates.library.nucleic_acid_term_name!
  • DNA
BIOSAMPLE
ASSAY

1663 results

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Clear Filters
total RNA-seq
single cell RNA-seq
RNA microarray
ChIP-seq
small RNA-seq
snATAC-seq
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
MPRA
STARR-seq
shRNA RNA-seq
siRNA RNA-seq
snDrop-seq
tissue
adipose tissue382
islet of Langerhans282
liver1641
kidney4964
bone element84
primary cell
Langerhans cell85
pancreatic alpha cell521
exocrine cell39
monocyte28
pancreatic beta cell211
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1311
HepG29
EndoC-BH111
MIN61
in vitro differentiated cells
cardiomyocytes47
adipocyte4
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
stem cell
SB Ad3.111
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