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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 755ChIP-seq
  • 195ATAC-seq
  • 60total RNA-seq
  • 49DNase-seq
  • 49pCHi-C
  • 19Hi-C
  • 19RRBS
  • 12snATAC-seq
  • 8WGBS
  • 4FAIRE-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3single cell RNA-seq
  • 2Capture-C
  • 1DNAme array
Assay category
  • 755DNA binding
  • 260DNA accessibility
  • 63Transcription
  • 28DNA methylation
  • 193D chromatin structure
Target of assay
  • 420transcription factor
  • 261histone
  • 261histone modification
  • 153narrow histone mark
  • 108broad histone mark
  • 88recombinant protein
  • 82RNA binding protein
  • 72control
  • 32chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 142May, 2020
  • 112October, 2019
  • 84May, 2021
  • 64November, 2018
  • 62December, 2017
  • 62June, 2019
  • 56August, 2017
  • 46August, 2021
  • 40February, 2023
  • 40March, 2020
  • 38July, 2019
  • 28December, 2018
  • 24November, 2019
  • 21January, 2019
  • 17February, 2021
  • 14May, 2019
  • 8October, 2018
  • 7October, 2017
  • 5January, 2021
  • 5March, 2019
  • 3October, 2022
  • 2April, 2019
  • 2September, 2017
  • 1March, 2023
  • 1May, 2022
Available data
  • 929bam
  • 848bigWig
  • 728bed narrowPeak
  • 543fastq
  • 529bigBed narrowPeak
  • 142tagAlign
  • 125bed broadPeak
  • 123bigBed broadPeak
  • 111tsv
  • 107bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1179Homo sapiens
Biosample type
  • 438cell line
  • 359primary cell
  • 267tissue
  • 111in vitro differentiated cells
  • 4stem cell
Organ
  • 414liver
  • 107pancreas
  • 91epithelium
  • 75brain
  • 58blood
  • 58bodily fluid
  • 52connective tissue
  • 46kidney
  • 46vasculature
  • 41blood vessel
  • 30heart
  • 19vein
  • 16musculature of body
  • 9adipose tissue
  • 9artery
  • 6eye
  • 5bone element
  • 5limb
  • 4skeleton
  • 3embryo
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1040AMP
  • 129T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 928hg19
  • 774GRCh38
Lab
  • 1009AMP-T2D consortium
  • 140Kyle Gaulton, UCSD
  • 9Klaus Kaestner, Upenn
  • 7Struan F.A. Grant, CHOP
  • 5Bing Ren, UCSD
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 75inconsistent ontology term
  • 28inconsistent control
  • 4audit script error
  • 1inconsistent replicate
Audit category:
  • 26missing controlled_by
Audit category:
  • 38inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
replicates.library.nucleic_acid_term_name!
  • RNA
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1179 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
Hi-C
RRBS
snATAC-seq
WGBS
FAIRE-seq
CRISPR genome editing followed by DNA sequencing
single cell RNA-seq
Capture-C
DNAme array
cell line
HepG233515211
GM1287856
Panc11111
EndoC_BH1223
RCC 7860 HIF1a re-expression4
primary cell
monocyte472211
naive thymus-derived CD4-positive, alpha-beta T cell2221
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
skeletal muscle myoblast15121
tissue
islet of Langerhans22371213
liver42111
brain11121
heart541
kidney12141
in vitro differentiated cells
neural progenitor cell2110
adipocyte7811
embryonic stem cell1151
hepatocyte15
cardiomyocytes (cardiac muscle cell)122
stem cell
hESC3
mesenchymal stem cell1
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