Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1116ChIP-seq
  • 336ATAC-seq
  • 163DNase-seq
  • 72snATAC-seq
  • 67WGBS
  • 15Hi-C
  • 8pCHi-C
  • 8total RNA-seq
  • 5GRO-seq
  • 2Capture-C
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1FAIRE-seq
  • 1MPRA
  • 1RNA microarray
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1116DNA binding
  • 572DNA accessibility
  • 69DNA methylation
  • 153D chromatin structure
  • 12Transcription
  • 1DNA sequencing
Target of assay
  • 756histone modification
  • 755histone
  • 393broad histone mark
  • 361narrow histone mark
  • 266control
  • 94transcription factor
  • 32RNA binding protein
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 1recombinant protein
Date released
  • 266August, 2017
  • 176October, 2019
  • 156June, 2019
  • 139May, 2022
  • 133May, 2021
  • 111November, 2017
  • 106May, 2019
  • 88August, 2021
  • 78April, 2019
  • 71February, 2023
  • 66October, 2018
  • 54May, 2020
  • 49February, 2021
  • 46September, 2018
  • 40May, 2024
  • 32December, 2017
  • 24February, 2018
  • 23November, 2018
  • 21July, 2019
  • 17November, 2019
  • 16October, 2017
  • 11January, 2021
  • 11May, 2023
  • 10April, 2020
  • 9January, 2019
  • 9March, 2020
  • 9September, 2017
  • 8January, 2018
  • 7August, 2020
  • 7December, 2018
  • 4March, 2023
  • 3September, 2020
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
Available data
  • 1128bam
  • 1089bed narrowPeak
  • 990bigWig
  • 513bigBed narrowPeak
  • 449fastq
  • 256tagAlign
  • 197bed broadPeak
  • 164bed bed3+
  • 162bigBed broadPeak
  • 101zippedFastqFolder
  • 64xls
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11hic
  • 11tsv
  • 10bedpe bed3+
  • 5bed bed3
  • 1txt
  • 1vcf
Organism
  • 1790Homo sapiens
Biosample type
  • 1194tissue
  • 355primary cell
  • 145in vitro differentiated cells
  • 105cell line
  • 6stem cell
Organ
  • 350pancreas
  • 230epithelium
  • 201heart
  • 190brain
  • 187liver
  • 180kidney
  • 157connective tissue
  • 125vasculature
  • 124blood vessel
  • 114limb
  • 82adipose tissue
  • 76artery
  • 72musculature of body
  • 42nerve
  • 36eye
  • 24spleen
  • 20embryo
  • 18ureter
  • 11blood
  • 11bodily fluid
  • 10lung
  • 8bone element
  • 8skeleton
  • 4gonad
  • 4ovary
  • 3vein
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 1598AMP
  • 138HPAP
  • 55T1D
  • 10LungMap
  • 4community
Genome assembly (visualization)
  • 1023GRCh38
  • 953hg19
  • 5hg18
Lab
  • 1364AMP-T2D consortium
  • 138Klaus Kaestner, Upenn
  • 133Kyle Gaulton, UCSD
  • 78Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 18Bing Ren, UCSD
  • 10Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 52inconsistent ontology term
  • 29audit script error
Audit category:
  • 63missing controlled_by
Audit category:
  • 18inconsistent control read length
  • 1inconsistent assembly
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

1805 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
WGBS
Hi-C
pCHi-C
total RNA-seq
GRO-seq
Capture-C
HiChIP
RRBS
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
FAIRE-seq
MPRA
RNA microarray
shRNA RNA-seq
siRNA RNA-seq
...and 1 more
tissue
liver10320131
kidney26751121
islet of Langerhans49314141
heart left ventricle342241
coronary artery4362
primary cell
pancreatic alpha cell133525
monocyte3813
pancreatic beta cell122316
Langerhans cell48
CD8-positive, alpha-beta T cell33
in vitro differentiated cells
adipocyte60
embryonic stem cell291
pancreatic endoderm151
definitive endodermal cell51
primitive gut cell51
cell line
HepG2431
EndoC_BH113171221
smooth muscle cell of the coronary artery48
GM1287841
EndoC-BH111
stem cell
SB Ad3.111
hESC1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego