Experiment Matrix

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BIOSAMPLE

	ASSAY
2484 results Clear Filters	ChIP-seq	ATAC-seq	DNase-seq	snATAC-seq	WGBS	total RNA-seq	pCHi-C	Hi-C	RRBS	FAIRE-seq	GRO-seq	Capture-C	CRISPR genome editing followed by DNA sequencing	single cell RNA-seq	HiChIP	CRISPR RNA-seq	CRISPR genome editing followed by sgRNA sequencing	CRISPRi RNA-seq	DNAme array	MPRA	RNA microarray	shRNA RNA-seq	siRNA RNA-seq	whole genome sequencing assay
tissue
liver	123	20	2		3		1	1	1
islet of Langerhans	57	68	1	7			4	3	1	1
kidney	17	75	13	6				1	1	1
coronary artery	5	36	2
body of pancreas	24	4	4		2
heart left ventricle	20	2	3		4		1	1	1
heart	6		18		1			1
tibial nerve	19	1	2			4
brain	7	1	14						1
left cardiac atrium	20		1
spleen	16	1	1		2		1
pancreas	8		2	4	2		1	1	1	1
subcutaneous abdominal adipose tissue	16				3
retina		15	3
muscle of arm			17
muscle of leg	3		13		1
skeletal muscle tissue	10	1		2					4
omental fat pad	11	1	2
subcutaneous adipose tissue	12	1																			1
pigmented layer of retina		12
tibial artery	9	1	2
white adipose tissue	12
heart right ventricle	6		1		2		1	1
layer of hippocampus	11
lung				10			1
renal cortex interstitium			11
right lobe of liver	7	1	2		1
aorta	6				2		1	1
renal pelvis			10
right kidney			10
thoracic aorta	9	1
adipose tissue	2	3			3		1
ascending aorta	8		1
left kidney			9
right atrium auricular region	6	1	2
angular gyrus	8
caudate nucleus	7		1
endocrine pancreas	8
substantia nigra	8
cingulate gyrus	7
middle frontal area 46	7
temporal lobe	7
cerebellum (Hemisphere)	4	1	1
right cardiac atrium	3				1		1
gastrocnemius medialis								4
germinal matrix	4
left renal cortex interstitium			4
left renal pelvis			4
right renal pelvis			4
superior frontal gyrus	4
central medial thalamic nucleus	3
frontal cortex			2							1
middle frontal gyrus	2		1
middle temporal gyrus	3
psoas muscle							1	2
putamen	2		1
right renal cortex interstitium			3
Ammon's horn			1				1
anterior cingulate gyrus	2
gyrus rectus	2
medial globus pallidus	2
occipital pole	2
pons	1		1
posterior cingulate gyrus	2
precuneus cortex	2
primary motor cortex	2
secondary auditory cortex	2
superior parietal cortex	2
supramarginal gyrus	2
thymus							2
white matter	2
acetabular part of hip bone		1
adipose tissue(adipose white tissue)		1
adrenal gland							1
agranular insular cortex	1
amygdala	1
arcuate nucleus of hypothalamus	1
bed nucleus of stria terminalis	1
bladder (urinary bladder)							1
body of caudate nucleus	1
brodmann area 43	1
cerebellar cortex			1
claustrum of brain	1
cuneus	1
dentate nucleus	1
distal epiphysis		1
distal epiphysis of femur		1
distal epiphysis of humerus		1
distal epiphysis of tibia		1
dorsal lateral geniculate nucleus	1
dorsal plus ventral thalamus	1
dorsolateral prefrontal cortex							1
esophagus							1
external globus pallidus	1
fastigial nucleus	1
forelimb muscle			1
frontal pole	1
gastric (mucosa of stomach)							1
globus pallidus			1
head of caudate nucleus	1
hindlimb muscle			1
hippocampal gyrus	1
hypothalamus	1
ilium		1
inferior frontal gyrus	1
inferior parietal cortex			1
inferior temporal gyrus	1
insular gyrus	1
ischium		1
lateral hypothalamic area	1
lateral occipital gyrus	1
lateral septal nucleus	1
lingual gyrus	1
locus coeruleus	1
mammillary body	1
medial dorsal nucleus of thalamus	1
medial geniculate nucleus	1
medial segment of precentral gyrus	1
medulla oblongata			1
midbrain			1
midbrain tectum	1
myelencephalon	1
nucleus accumbens	1
occipital lobe			1
olivary body	1
orbital gyrus	1
ovary							1
paraterminal gyrus	1
pericardium									1
pineal body	1
piriform cortex	1
pituitary gland	1
planum polare	1
planum temporale	1
postcentral gyrus	1
posterior cingulate cortex		1
primary somatosensory cortex	1
proximal epiphysis		1
proximal epiphysis of femur		1
proximal epiphysis of humerus		1
proximal epiphysis of tibia		1
pubis		1
pulvinar nucleus	1
raphe nuclei	1
red nucleus	1
sigmoid colon							1
small intestine							1
subiculum	1
substantia nigra pars reticulata	1
subthalamic nucleus	1
superior occipital gyrus	1
superior temporal gyrus			1
suprachiasmatic nucleus	1
temporal pole	1
transverse temporal gyrus	1
uncus of parahippocampal gyrus	1
ventral anterior nucleus of thalamus	1
primary cell
pancreatic alpha cell	10	35			31			1
monocyte	41	15				2	1												1
pancreatic beta cell	10	23			16			1
Langerhans cell				48
naive thymus-derived CD4-positive, alpha-beta T cell	1	22					1
CD4-positive, alpha-beta memory T cell		22
CD8-positive, alpha-beta T cell	13	2				2	1
pancreatic acinar cell	4	9						1
endothelial cell of umbilical vein	8		2					2		1
skeletal muscle myoblast	9		2			1			1
macrophage		11					1
pancreatic endocrine cell	12
pancreatic ductal cell	7	4
epithelial cell of proximal tubule	7		1			1			1
cardiac fibroblast	5		3						1
peripheral blood mononuclear cell				8
kidney epithelial cell	3		1			1			1
B cell		2				2	1
astrocyte of the cerebellum	3		1					1
brain microvascular endothelial cell	3		1					1
cardiac muscle cell	3		1						1
choroid plexus epithelial cell	3		1						1
hepatocyte	3		1						1
naive B cel		2				2	1
naive thymus-derived CD8-positive, alpha-beta T cell		2				2	1
osteoblast		2	1			1	1
retinal pigment epithelial cell	3		1						1
skeletal muscle satellite cell	4					1
T follicular helper cell		2				2
T-helper 1 cell		2				2
T-helper 17 cell		2				2
T-helper 2 cell		2				2
central memory CD8-positive, alpha-beta T cell		2				2
effector CD4-positive, alpha-beta T cell		2				2
effector T cell		2				2
effector memory CD8-positive, alpha-beta T cell		2				2
gamma-delta T cell		2				2
mature natural killer cell		2				2
memory B cell		2				2
memory T cell		2				2
memory regulatory T cell		2				2
naive regulatory T cell		2				2
regulatory T cell		2				2
skeletal muscle cell	2		1						1
gabaergic neuron		3
glutamatergic neuron		3
kidney tubule cell			3
mesenchymal stem cell	3
microglial cell/astrocyte		3
oligodendrocyte		3
renal cortical epithelial cell			1			1			1
CD4-positive, alpha-beta T cell							2
brain pericyte			1					1
cerebellar granule cell														2
glomerular endothelial cell			1			1
glomerular visceral epithelial cell			2
immature natural killer cell		1				1
kidney glomerular epithelial cell			2
myeloid dendritic cell		1				1
natural killer cell		1				1
plasma cell		1				1
plasmacytoid dendritic cell		1				1
Heart fetal (cardiac muscle cell)		1
Liver fetal (hepatocyte)		1
Purkinje cell														1
activated CD4-positive, alpha-beta T cell							1
adult endothelial progenitor cell							1
alternatively activated macrophage							1
astrocyte of the hippocampus			1
cardiac atrium fibroblast						1
cardiac ventricle fibroblast						1
chondrocytes								1
endothelial cell of coronary artery						1
endothelial cell of hepatic sinusoid								1
erythroblast							1
hepatic stellate cell			1
inflammatory macrophage							1
kidney capillary endothelial cell			1
megakaryocyte							1
mesangial cell						1
mesenchymal stem cell of adipose						1
neutrophil							1
pericardium fibroblast						1
smooth muscle cell of the brain vasculature			1
smooth muscle cell of the coronary artery						1
cell line
HepG2	369	1			1	5	2	2																1
GM12878	60	1
EndoC_BH1	9	19						1				2	3		2		1
smooth muscle cell of the coronary artery	6	8
Panc1	9		1					1
RCC 7860 HIF1a re-expression	4
RCC 7860 vector	3						1
RCC 7860 HIF2a over-expression	3
EndoC-BH1																						1	1
iPSC derived cell line	2
MCF-7							1
MIN6																				1
RCC 7860 VHL							1
fibroblast cell line							1
glomerular visceral epithelial cell			1
in vitro differentiated cells
adipocyte	47	8	1									1
embryonic stem cell	29	6					1
neural progenitor cell	14	10
pancreatic endoderm	14										1
hepatocyte	8
definitive endodermal cell	6										1
primitive gut cell	6										1
Pancreatic progenitors (progenitor cell of endocrine pancreas)		5
Posterior foregut	4										1
cardiomyocytes (cardiac muscle cell)		1					2	2
chondrocyte		5
Hepatic endoderm	4
cardiomyocytes	3
pancreatic PP cell	3
cardiac precursors (cardiac muscle cell)		1						1
endocrine cell	2
immature adipocyte		2
lymphocyte of B lineage (iPSC)							1	1
osteoblast		1										1
posterior foregut	2
Progenitor cell of Hypothalamus (neural progenitor cell)		1
neuron cell of Hypothalamus (neuron)		1
preadipocyte		1
white fat cell							1
stem cell
hESC	2										1
SB Ad3.1																1		1
mesenchymal stem cell							1
mesendoderm							1
neural progenitor cell (neural stem cell)							1
trophoblast							1

Experiment Matrix

Assay

Assay category

Target of assay

Date released

Available data

Organism

Biosample type

Organ

Project

Genome assembly (visualization)

Lab

Audit category:

Audit category:

Audit category:

replicates.library.nucleic_acid_term_name!

target.investigated_as!

2484 results