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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1683ChIP-seq
  • 426ATAC-seq
  • 185DNase-seq
  • 78snATAC-seq
  • 75WGBS
  • 29pCHi-C
  • 25Hi-C
  • 21RRBS
  • 14total RNA-seq
  • 5GRO-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3single cell RNA-seq
  • 2Capture-C
  • 2FAIRE-seq
  • 2HiChIP
  • 1whole genome sequencing assay
Assay category
  • 1683DNA binding
  • 691DNA accessibility
  • 96DNA methylation
  • 253D chromatin structure
  • 17Transcription
  • 1DNA sequencing
Target of assay
  • 878histone modification
  • 877histone
  • 481transcription factor
  • 454broad histone mark
  • 422narrow histone mark
  • 322control
  • 105RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 282August, 2017
  • 241October, 2019
  • 188June, 2019
  • 147May, 2021
  • 139May, 2022
  • 120May, 2019
  • 110May, 2020
  • 93August, 2021
  • 91December, 2017
  • 85November, 2018
  • 79April, 2019
  • 76February, 2023
  • 73October, 2018
  • 63February, 2021
  • 46September, 2018
  • 45July, 2019
  • 40May, 2024
  • 40November, 2019
  • 35December, 2018
  • 30January, 2019
  • 24February, 2018
  • 20March, 2020
  • 16October, 2017
  • 14January, 2021
  • 11May, 2023
  • 9April, 2020
  • 9September, 2017
  • 8January, 2018
  • 7August, 2020
  • 3September, 2020
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
Available data
  • 1751bam
  • 1638bed narrowPeak
  • 1549bigWig
  • 996bigBed narrowPeak
  • 942fastq
  • 290bed broadPeak
  • 275tagAlign
  • 261bigBed broadPeak
  • 203bed bed3+
  • 101zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 32tsv
  • 16bedpe bed3+
  • 15hic
  • 7bed bedgraph
  • 6bed bed3
  • 5hdf5
  • 4tar
  • 3txt
  • 2ibed
  • 1vcf
Organism
  • 2554Homo sapiens
Biosample type
  • 1293tissue
  • 539cell line
  • 523primary cell
  • 192in vitro differentiated cells
  • 7stem cell
Organ
  • 589liver
  • 397pancreas
  • 303epithelium
  • 216heart
  • 214brain
  • 213kidney
  • 167connective tissue
  • 167vasculature
  • 161blood vessel
  • 119limb
  • 85musculature of body
  • 83artery
  • 81adipose tissue
  • 67blood
  • 67bodily fluid
  • 42nerve
  • 40eye
  • 24spleen
  • 23embryo
  • 21vein
  • 18ureter
  • 9bone element
  • 9lung
  • 8skeleton
  • 4gonad
  • 4ovary
  • 1bone marrow
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1thymus
Project
  • 2325AMP
  • 144HPAP
  • 76T1D
  • 9LungMap
Genome assembly (visualization)
  • 1565hg19
  • 1548GRCh38
  • 5hg18
Lab
  • 2084AMP-T2D consortium
  • 152Kyle Gaulton, UCSD
  • 144Klaus Kaestner, Upenn
  • 82Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 20Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 9Xin Sun, UCSD
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 100inconsistent ontology term
  • 29audit script error
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 75missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

2554 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
total RNA-seq
GRO-seq
CRISPR genome editing followed by DNA sequencing
single cell RNA-seq
Capture-C
FAIRE-seq
HiChIP
whole genome sequencing assay
tissue
liver139201311
kidney267511611
islet of Langerhans495054111
body of pancreas35442
heart left ventricle3522411
cell line
HepG2378112251
GM12878601
EndoC_BH115191322
Panc11311
smooth muscle cell of the coronary artery68
primary cell
pancreatic alpha cell133531
monocyte38131
pancreatic beta cell132316
Langerhans cell48
CD8-positive, alpha-beta T cell33
in vitro differentiated cells
adipocyte6041
embryonic stem cell292
pancreatic endoderm181
hepatocyte15
definitive endodermal cell81
stem cell
hESC31
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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